barSeed - Barley Seed Development Database

Probe CUST_29158_PI390587928

Source Contig U35_50197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29158_PI390587928	Hv_44K_v2	CCGACCTGAAAATATTGATTTACTTTTCCTTAGCATGTACGAGGATAAGTGAATTACGTA	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69825.1	1985	2e-24	1854 - 1913	100	60 / 60	plus	ABC14510
JLOC1	JLOC1_46297.1	1990	8e-25	1849 - 1908	100	60 / 60	plus
Harvest21	ABC52243	448	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_50197	448	3e-25	375 - 434	100	60 / 60	plus

Contig Sequence (448 bp)

>U35_50197 448 Hv_44K_v2
CGCAAGTATGGGGGCGTCCCACACTGGGGCAAGAGCCGCAATTTCGCCTTCGATGGTGCC
ATCGCAAAGTACCCAAAAGTCCATGAGTTTCTTAGGGTGAAACATAGGTACGACCCCGAG
GGGCTCTTCTCCAACGAGTGGACTGACCAGGTTCTCGGTATCAATGGGAGTCCCAGCATC
ATTAAAAAGCGTTGCGCCATTGAAGGACTTTGCGTCTGCTCCAACAACTCGCACTGTGCT
CCGGAGCAAGGCTACTTCTGCAGGCCAGGGAAGGTGTATAAGGAGGCTCGAGTCTGCTCG
TTCTTCAAGGATTATTAAGGATGTAAAATTTGGTAGAGCCGTGCATTGCACTACGCTCCT
TTCCGGTTGCTTGTCCGACCTGAAAATATTGATTTACTTTTCCTTAGCATGTACGAGGAT
AAGTGAATTACGTAAAATATGTTGAACC

Homology of Contig U35_50197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02230.1	590	4e-54	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g18180.1	590	5e-56
Arabidopsis v10	None