barSeed - Barley Seed Development Database

Probe CUST_29154_PI390587928

Source Contig U35_15802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29154_PI390587928	Hv_44K_v2	ACATAGACTCCGCTACCACGAGCCTTGGTGAGGAGCGAGGGGTTGCTTGATTGCTTCGTA	217	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18471.1	1609	2e-24	855 - 914	100	60 / 60	minus	ABC04395
MLOC	MLOC_18471.2	1161	2e-24	643 - 702	100	60 / 60	minus	ABC04395
JLOC1	JLOC1_12785.1	1362	8e-25	833 - 892	100	60 / 60	minus
JLOC1	JLOC1_12784.1	1191	8e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC30670	636	3e-25	218 - 277	100	60 / 60	plus
Harvest35	U35_15802	635	3e-25	218 - 277	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_15802 635 Hv_44K_v2
GTTTGTTTTACTTTTCGGCTGATCGACTGTAGTCACGAGGCCTCCCGATCAACCAGTTTG
GCCGTTTCGTGGCTCGCAAACTCTGATCCGTGTCTGTTGCCGCTCCATTTCTTTTGGCTG
CTCTGCTGCTAGCTCCATGGGCGCATGTTCTTGCCACTCTAGAGTCCATGCGTGCTCACT
TTTGTTTCTTCGTCGTGTAGCTTGCGCGCAGGTGGCTACATAGACTCCGCTACCACGAGC
CTTGGTGAGGAGCGAGGGGTTGCTTGATTGCTTCGTAGGGGCTCTGTGCCGTGCCCGTGC
GTGTGCGGTGGAGATGATGGGAGGAGGGGTGGCGATGATGGATCGGCGGATGGAGTTCGC
GGCGGACGGCGACGTCGACAAGGGCTTCGGGTTCTTTGGAGCCGGCTGCTTCGTGGGGGC
GGGCGACCTCGTGGACCCCGTGCAGGCGCCGGCGCCGGAGCAGCGGGCGCGGGACAGGTT
CCCCGACGAGGACGAGAGCGAGGAGGAGGAGGACGACGACGACGTGGACGGCATCGAGGA
GCTGGAGCGCCGCATGTGGCGCGACCGCATGAGGCTCAAGCGCCTCAAGGAGCTGCAGCA
GCGGCAGAGCCAGAGGCCCGACGGGGGCGCGGCGA

Homology of Contig U35_15802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None