barSeed - Barley Seed Development Database

Probe CUST_29153_PI390587928

Source Contig U35_15803

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29153_PI390587928	Hv_44K_v2	TTGATTCCGTTCCTTGTGGTTGGTGAATGTACGAACTGGTGCTCTCTTATGTGAACTCTC	2503	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.897	1.917	1.930	1.376	0.483	0.471
Raw	419.605	1418.554	1216.582	1371.333	170.711	178.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9981.2	2924	8e-25	2725 - 2784	100	60 / 60	plus
JLOC1	JLOC1_9981.1	2339	8e-25	2140 - 2199	100	60 / 60	plus
Harvest21	ABC04395	2601	3e-25	2504 - 2563	100	60 / 60	plus	ABC04395
Harvest35	U35_15803	2601	3e-25	2504 - 2563	100	60 / 60	plus

Contig Sequence (2601 bp)

>U35_15803 2601 Hv_44K_v2
CAGCTCATCTCCCCTCTCCTCTCCTCGTGCCTTCTTCTCTCCCCCTTTCCCCCACCCTCC
CTTCGCTGTTCTTCTCTCCGCCCCTCTTCCTAGCTCTCCCAGGTCATGGCAAAGGTGAAA
ACCGGATAAAAACTAGAAGTGGGAGGGAGATCGACGCAGCTGAACACCACAGCTACAAGT
AGTAGTAGAGCAAGTGGAATTTATATTGAAAGAGAAGAGTTGCTCGAGTGACCATGATGG
GAGGGGGAGGTGGGCTGCTGATGGATCAGGGCATGGCGTTCCCCGGCGTGCACAACTTCG
TGGATCTGCTCCAGCAGAACGGCAACGACAAGAACCTCGGCTTCGGCTCCCTTATGCCAC
AGACTTCCTCCGGCGACCAGTGCGTCATGGGCGAGGGCGACCTTGTGGACCCGCCGACGG
ACAACTTCCCGGACGCCGGGGAGGACGACAGCGACGACGACGTGGATGACATCGAGGAGC
TGGAGCGCCGCATGTGGCGCGACCGCATGAAGCTCAAGCGCCTCAAGGAGCTTCAGCAGA
GCCGCGGCAAGGAGCAGGCGGCCGGCGGCGGCGGAGTGGGCGACGGGTTGAAGCCGCGGC
AGTCGCAGGAGCAGGCGCGCCGCAAGAAGATGTCGCGCGCGCAGGACGGCATCCTCAAGT
ACATGCTCAAGATGATGGAGGTGTGCCGCGCCCAGGGGTTCGTGTACGGCATCATCCCGG
AGAAGGGCAAGCCCGTGAGCGGCGCCTCCGACAACCTCCGTGCCTGGTGGAAGGAGAAGG
TCCGCTTCGACAGGAACGGCCCGGCCGCCATCGCCAAGTATCAGGCCGACAACGCCGTGC
CGGGCTCCGAGAGCGAGCTGGCTTCCGGCACCGCGAGCCCGCACTCGCTGCAGGAGCTGC
AGGACACCACGCTGGGCTCGCTGCTCTCGGCGCTCATGCAGCACTGCGATCCCCCGCAGC
GAAGGTTCCCGCTCGAGAAGGGCATCTCTCCTCCATGGTGGCCGTCCGGCGACGAGGAGT
GGTGGCCGGAGCTTGGCATCCCCAAGGACCAGGGCCCGCCCCCGTACAAGAAGCCCCATG
ACCTGAAGAAGGCCTGGAAGGTGAGCGTGCTCACCGCTGTCATCAAGCACATGTCGCCGG
ACATCGAGAAGATCCGACGCCTCGTCCGCCAGTCCAAGTGCCTCCAGGACAAGATGACCG
CCAAGGAGATCTCCACCTGGTTGGCCGTGGTCAAGCAGGAAGAGGAGCTATTCATGAGGC
TGCACCCGGGCGCTCGCCCTCCAGCGACTGCTGCTGGCGGCATCGCCAGTGCGATATCAT
TCAACGCCAGCTCAAGTGAGTACGACGTTGACGTCGCCGACGACTGCAAGGGCGATGAGG
CCGGCACCCACAAGATGGCCATGGCTGATCCAACCGCGTTCAACCTCGGCGCGGCCATCC
TGAATGACAAGTTCCTCATGCAAGCGCCCATGAAAGAAGAGACCGCTGACATGGAGTATG
TCCAGAAGAGGAGCGCCGTGGCCGCCGAGCCGGAGCTGATGCTGAACAACCGCGTCTACA
TCTGCAACAACGTCCAATGCCCGCACAGCGACTACGGGTACGGCTTCCTTGACCGGAATG
CGCGCAACAGCCACCAGTACACCTGCAAGTACAATGATGCCCTCCCGCCAAGCGCGGAGA
ACAAGGCGGCGCCACCTGCGCCGCCGCAAGTCTTCCCGGCAGCAGCCTACAACCAGCAGA
ACCATGGGCTCAACAACCTGGACTTTGGCCTGCCCATGGACGGCCAGAGGTCCATCGCCG
AGCTCATGAACATGTACGACACCGCCTTCCCGGCCAACAAGAACATGGGCAACGACGACG
TCACCATTATAGAGAGGCCTAATTCCCTCACCCCGGGAACGCAGATGGACGAGGGTTTCT
TTGGACAGGGCAATGGAATTGGCGGCAATGGCGACAGCATGTTCAGTGATGTCAGTAACA
TGATGCAGCAGCAGCAGCAACAGCAACCACAGCAGCAGCAGCAGGCCCCGGCTCAGCAGC
AGTTCTTCATCCGTGACGAAACGCCGCAATTCGGAAACCAGATGGGCGGCATCTCCGGCG
CATCGGATTTCAGGTTCGGCTCTGGCTTCAACATGTCCGGCGCCGTCGACTACCCGCAGA
AGAACGACGGCCCCAACTGGTACTACTGAAGAATAAGCTTAAGCTTGTAGGGTCATAAGC
TTTTAAAATGTCAACTCCTGGTGGCAAAACCAACCTTGTGTTTCCATGGGAAAGTGTCGT
CGTCTCCTAAGAAGTGGGTAATTCTCTATAGGTCTTCTCTTAATTTTCATATAGGTTTTG
CAGTAGTTGCAAATAGGCTGGAACTTGGAACTGGTTATATATACATGTATGTCCATCCAG
CTGGTGAACCTCTTATGGAAAACTTAATTTTATTCTTAGTTTCATTTCTTAGTTAAACGA
TGTTCATATGGCTGCTTGGTTGTCAAAATGTTTTGTGTATTCGTTGATTCCGTTCCTTGT
GGTTGGTGAATGTACGAACTGGTGCTCTCTTATGTGAACTCTCTCTGGTGATAAATATAT
ATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_15803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20790.1	641	0.0	protein\|ethylene-insensitive 3, putative, expressed
Brachypodium v1_2	Bradi1g63780.1	651	0.0
Arabidopsis v10	AT2G27050.1	584	6e-152	\| Symbols: EIL1, AtEIL1 \| ETHYLENE-INSENSITIVE3-like 1 \| chr2:11546314-11548068 FORWARD LENGTH=584