barSeed - Barley Seed Development Database

Probe CUST_29148_PI390587928

Source Contig U35_15808

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29148_PI390587928	Hv_44K_v2	ATGTTGTCTTTGTATGGCATGGGTACGCAAAGAGCACCTAAATAATGTACTGTATACGCC	2642	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.697	1.741	1.237	0.592	0.174	0.249
Raw	874.092	1368.352	854.981	647.389	66.827	105.350

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03814	2701	3e-25	2642 - 2701	100	60 / 60	plus	ABC03814
Harvest35	U35_15808	2702	3e-25	2643 - 2702	100	60 / 60	plus

Contig Sequence (2702 bp)

>U35_15808 2702 Hv_44K_v2
GGTTCCGCCGCTTCCACCCACCTCCACCTTGACCTCGCCTCGCCCACCCGTTCTCCCTCG
CTCCCTCTTCTTTTTTTTGTCTCTCCCTTCCTCGCCTCGCCCGTCTCGATCCGGAGCGAG
CGAGCGAGCGAGAGCGGGTCGCCGCGCCGGGGGGAGAAGCGGGAGCGGAGAATGGGCAGG
GGTGGCATCGGGGGCGCCGTTGCGGCGGCGGACCTCGAGAACAGCGACTCCACCCGCTGC
TTCGTCAGGGACGTCAAGCGCATCGTCGTCAAGGTCGGCACCGCTGTTGTCACCGGGCAG
AATGGCCGACTCGCCATGGGCAGGCTCGGAGCTCTCTGCGAGCAGGTGAAGGAGCTTAAT
TTCCAGGGGTATGAGGTGATCCTGGTCACCTCCGGCGCCGTTGGCGTCGGGAGGCAGAGG
CTCAAGTACCGGAAGCTAATCAACAGCAGCTTTGCGGATCTGCAGAACCCACAGTTGGAC
CTGGACGGGAAGGCCTGCGCTGCCGTCGGCCAGAGTGGCCTCATGGCTATCTACGATACG
CTGTTTAGCCAACTTGATGTGACATCGTCTCAGCTTCTTGTCACCGATCGCGATTTCCGG
GATCCAAGTTTTGGGCACCAGCTTCGTGAGACTGTCGTCTCTCTGTTAGATCTTAAAGTG
ATACCAGTGTTTAATGAGAACGATGCTATCAGTACGAGGAGAGCGCCATACGAGGATTCA
TCCGGTATATTCTGGGATAACGACAGTTTGGCGACGCTGTTGGCAAAAGAACTGGACGCT
GATCTTCTTATCATGCTTAGTGATGTGGAGGGACTCTATAGTGGTCCACCGAGTGATCCT
CAATCAAAGATTATCCACACGTACATCAATGAAAAACACGGGAAGCTAATTAATTTTGGG
GAGAAGTCTCGCGTGGGAAGGGGTGGAATGCAAGCTAAAGTGGCAGCTGCTGTTACTGCT
GCATCCAAGGGCGTACCTGCTGTCATTGCAAGTGGATTTGTAACAGATAGCATTATTAAG
ATTATGCGAGGAGAGAAAATTGGTACGCTTTTCCATAATGAAGCAAATGTCTGGGATTGT
ACCAAGGAAGTGACAACCCGTGAGATGGCAGTTGCTGCAAAAGATTGCTCGCGGCATCTC
CAGAATTTGTCATCAGAGGAGCGTAAGAAAATTTTGCTAGATATTGCTGATGCTCTGGAA
GCAAATGTGGGTTTAATTATAGCTGAGAATGAGGCTGATCTAGCCGCGGCACAAGATGCA
GGCTATGAGAAATCTTTGGTTGCTAGGATGACCCTGAAGGCAGGAAAGATAACAAGCCTT
GCTGAATCCATTCGTGCAATTGCGGACATGGAGGATCCTATTTCACATACACTGAAAAAA
ACAGAGGTTGCTAAGGATTTAGTATTTGAGAAGATGTACTGCCCATTGGGCGTTCTCCTA
ATTATTTTCGAGTCTCGTCCTGATGCCCTGGTCCAGATTGCAGCTCTAGCAATCCGAAGT
GGAAATGGTCTTCTTCTGAAAGGAGGAAAAGAAGCTATGAGATCAAACACAATATTGCAT
AAGGTCATAACCAGCGTGATTCCAGATGGTGTTGGTAAAAAGCTTATTGGCCTTGTAAAA
AGCAAAGAAGAAATTGCTGATCTTCTAAAGCTTGACGATGTGATTGATCTTGTTATTCCG
AGAGGCAGTAACAGGCTCGTTTCTCAAATCAAAGCAACAACTAAGATTCCTGTTCTTGGT
CATGCTGATGGTATCTGCCATGTTTATATTGATAAATCGGCTGACATGGATATGGCAAAG
CGTATTGTATTGGATGCAAAGGTGGATTATCCGGCAGCATGTAATGCTATGGAAACACTA
CTTGTTCATAAAGATCTGAACAAGACAGAGGGTCTTGATGATTTGTTGATGGAACTCGCG
AAAGAAGGAGTTGTTATTTATGGTGGACCTGTTGCACATGACACATTGAAAGTACCAAAG
GTAGATTCATTTCATCATGAGTATAGCTCAATGGCATGCACGCTCGAATTTGTTGATGAT
ATACAGTCAGCAATTGACCATATAAATCGTTATGGAAGTGCACACACAGATTGTATTATC
ACAACCGATAAGAAGTCAGCAGATACTTTCCTACAACAAGTTGATAGTGCTGCTGTGTTC
CATAATGCAAGCACAAGGTTCTGTGATGGGACTCGCTTCGGTCTAGGTGCAGAGGTTGGC
ATAAGCACAGGGCGCATACATGCCCGTGGACCTGTTGGTGTCGACGGTCTTCTAACCACT
CGGTGCATTCTACGAGGGAGTGGACAAGTAGTGAACGGAGACAAGGGAGTTGTGTACACC
CACAAGGATCTTCCTTTGCAATGAGGGTAGAGGATTCTTGCTGTAGTTAAATCAATTTTT
GTAGAATAATCCTCTTCAAAGCCCCCTTCTCTTTGCGCGAGGAATGAAGAAAGACAGGAG
AACGTTGTTACTGTGTCGCTATCTGGTTCCGTGATTGCCTTCGGTTTGCTGTACAATGAT
TTATCCATACAATGTCGTAGTTATGGCACTGGCTGTTGTAACTGTAGAATTGCATCGGTA
CATCTATGCTATATATGTGAAGCAGCTGTACTGTTTCTGATGAAGTCTCAAATCCCTTTG
TCATGTTGTCTTTGTATGGCATGGGTACGCAAAGAGCACCTAAATAATGTACTGTATACG
CC

Homology of Contig U35_15808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g62900.1	736	protein\|amino acid kinase, putative, expressed
Brachypodium v1_2	Bradi2g54920.1	733
Arabidopsis v10	AT2G39800.1	717	\| Symbols: P5CS1, ATP5CS \| delta1-pyrroline-5-carboxylate synthase 1 \| chr2:16598516-16602939 REVERSE LENGTH=717