barSeed - Barley Seed Development Database

Probe CUST_29145_PI390587928

Source Contig U35_15811

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29145_PI390587928	Hv_44K_v2	TGCCTACGGTTAATCAAGAGAATGGAATACTTGGCACCGAACCTACAGAAACCATGCTGA	778	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73340.1	2428	2e-24	1419 - 1478	100	60 / 60	minus	ABC03769
JLOC1	JLOC1_48828.1	2080	8e-25	967 - 1026	100	60 / 60	plus
JLOC1	JLOC1_48827.1	1423	4e-23	1367 - 1423	100	57 / 57	minus
Harvest21	ABC03771	850	3e-25	779 - 838	100	60 / 60	plus
Harvest21	ABC03769	1867	3e-25	828 - 887	100	60 / 60	plus	ABC03769
Harvest35	U35_15812	1331	3e-25	860 - 919	100	60 / 60	plus
Harvest35	U35_15811	839	3e-25	779 - 838	100	60 / 60	plus

Contig Sequence (839 bp)

>U35_15811 839 Hv_44K_v2
GCACTGCACTCACTCCCTCCTCGCCTACTTCTTGATATGGAGAAGGCGGCGTCCTTCCTC
TCCTCCCTCCTCGGCACCGGCGGCGAGGAGGGGCCGTCGGGGGAGCCGGCGGCGACGGTG
GCGTCCATCCTCATATACCCCGTCAAGTCCTGCAAGGGCGTCTCCGTAACGCAGGCCCCC
GTCACCGCCACCGGGTTCAGGTGGGACCGGCAGTGGTTGGTGGTGAACGCCAAGGGCAGG
GCGCTCACGCAGCGGGTGGAGCCCAAGATGGCGCTGGTCGAGGTGGAGTTGCCGCCGGCC
GCCTTCGACGACGACTGGCAGCCCGCCCCCGACTCCTACCTGGTTATAAGAGCACCCGGG
ATGGACACGCTGAAGGTCCCTCTTGCTGCGGAACACGCCACGCTTGACGACGTCTCCGTC
TGGGAGTGGTCTGGTTCTGCTTATGATGAAGGCCCTGAAGCAGCTGAATGGCTCTCCGCC
TATTTCGGGAAGCCAAGCCGGCTCGTCCGGTTTAAAGAAGAGTCCGAAATCAGACCGACT
AATCCTGAGTATGCTCAAGGCTACAAGCTCACCTTCACGGATTGCTTCCCGTTCCTGATA
GCATCCCAGGGCTCACTGGATGCACTAAATGAGCTTCTTAAGGAACCTGTACCAATCAAT
CGCTTCAGACCAAATATTTTAGTGGATGGATGCCACCCCTACGCAGAGGATCTGTGGAAA
ACCATAAAGATAGACAAGCTAACATTTGACGGTGTGAAGTTATGCGACCGTTGCAAGGTG
CCTACGGTTAATCAAGAGAATGGAATACTTGGCACCGAACCTACAGAAACCATGCTGAC

Homology of Contig U35_15811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38772.1	325	6e-150	protein\|MOSC domain-containing protein, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g37990.1	326	3e-154
Arabidopsis v10	AT5G44720.1	308	6e-116	Molybdenum cofactor sulfurase family protein \| chr5:18043086-18045275 FORWARD LENGTH=308