barSeed - Barley Seed Development Database

Probe CUST_29144_PI390587928

Source Contig U35_15812

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29144_PI390587928	Hv_44K_v2	AATGGTTCTTCAGTCGACGTCTGTCGATCGGTCAAACAGTTGAATGTGCTTCTCGGTAAA	1257	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.003	2.556	0.921	0.787	0.442	0.625
Raw	131.221	176.996	56.227	82.482	14.606	23.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73340.1	2428	9e-22	1024 - 1078	100	55 / 55	minus	ABC03769
JLOC1	JLOC1_48828.1	2080	5e-22	1367 - 1421	100	55 / 55	plus
JLOC1	JLOC1_48827.1	1423	5e-22	899 - 953	100	55 / 55	minus
Harvest21	ABC03769	1867	2e-22	1228 - 1282	100	55 / 55	plus	ABC03769
Harvest35	U35_15812	1331	3e-25	1258 - 1317	100	60 / 60	plus

Contig Sequence (1331 bp)

>U35_15812 1331 Hv_44K_v2
GAATGGCGCGCCGCAGCAGGTGGGTAGGGAGGCGGTGAGATAAGGCGCTTGTCGCTGTCG
CTTCTCCGGTCACCACTCTCTGCACTGCACTCACTCCCTCCTCGCCTACTTCTTGATATG
GAGAAGGCGGCGTCCTTCCTCTCCTCCCTCCTCGGCACCGGCGGCGAGGAGGGGCCGTCG
GGGGAGCCGGCGGCGACGGTGGCGTCCATCCTCATATACCCCGTCAAGTCCTGCAAGGGC
GTCTCCGTAACGCAGGCCCCCGTCACCGCCACCGGGTTCAGGTGGGACCGGCAGTGGCTG
GTGGTGAACGCCAAGGGCAGGGCCCTCACGCAGCGGGTGGAGCCCAAGATGGCGCTGGTC
GAGGTGGAGTTGCCGCCGGCCGCCTTCGACGAGGACTGGCAGCCCGCCCCTGACTCCTGC
CTGGTTATAAGAGCACCCGGCATGGACACGCTGAAAGTCCCTCTTGCTACGGAACACGCC
ACGCTTGACGACGTCTCCGTCTGGGAGTGGTCTGGTTCTGCTTATGATGAAGGCCCTGAA
GCAGCTGAATGGCTCTCCGCCTATTTCGGGAAGCCAAGCCGGCTCGTGCGGTTTAAAGAA
GAGTCCGAAATCAGACCGACTAATCCTGAGTATGCTCAAGGCTACAAGCTCACCTTCACG
GATTGCTTCCCGTTCCTGATAGCATCCCAGGGCTCACTGGATGCACTAAATGAGCTTCTT
AAGGAACCTGTACCAATCAATCGCTTCAGACCAAATATTTTAGTGGATGGATGCCACCCC
TACGCAGAGGATCTGTGGAAAACCATAAAGATAGACAAGCTAACATTTGACGGTGTGAAG
TTATGCGACCGTTGCAAGGTGCCTACGGTTAATCAAGAGAATGGAATACTTGGCACCGAA
CCTACAGAAACCATGCTGACATTCCGGTCCGGTGAAGTGCTCCGTCCGAGCCACAAGAAT
AAGCAGAAGGTCTACTTTGGGCAAAATCTGGTCTGCAAGGAATCGGTATCAGCAAAGGGC
AAAGGGAGGATCGTCAAGGTCGGCGACCCGGTTTACGTTCTTCAGACATACCCTTCTTCC
GATGAAGTTCCAGCCTGAGCGAGGGCTTGGTAGTACGTACTGTATCTGTGTTTATGTGTG
CGTCGAAGAGATGACCGGGTCGGTTGATTTTGTGTGCACATTACGTAAATTCAACTTAGC
AATAAAAGCTCGACGAGCGTGATCGTCGTGCCCTCCATCTCAAAAAAAAAAAAAAAAAAT
GGTTCTTCAGTCGACGTCTGTCGATCGGTCAAACAGTTGAATGTGCTTCTCGGTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_15812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38772.1	325	0.0	protein\|MOSC domain-containing protein, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g37990.1	326	0.0
Arabidopsis v10	AT5G44720.1	308	1e-127	Molybdenum cofactor sulfurase family protein \| chr5:18043086-18045275 FORWARD LENGTH=308