barSeed - Barley Seed Development Database

Probe CUST_29132_PI390587928

Source Contig U35_15824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29132_PI390587928	Hv_44K_v2	CATAACTTGTCTGGGTGTTACTCATTTCTCAGCTGTATATAAATAAATATGCATGTGTGC	624	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68.1	1760	2e-24	46 - 105	100	60 / 60	minus	ABC03950 ABC03951 ABC10317
MLOC	MLOC_68.2	1767	2e-24	46 - 105	100	60 / 60	minus	ABC03950 ABC03951 ABC10317
MLOC	AK363206	1670	7e-23	1598 - 1657	98	59 / 60	plus	ABC03950 ABC03951 ABC10317
MLOC	AK376393	1599	7e-23	1496 - 1555	98	59 / 60	plus	ABC03950 ABC03951 ABC10317
JLOC1	JLOC1_59.4	1746	8e-25	1676 - 1735	100	60 / 60	plus
JLOC1	JLOC1_59.3	1732	8e-25	1662 - 1721	100	60 / 60	plus
JLOC1	JLOC1_59.2	1726	8e-25	1656 - 1715	100	60 / 60	plus
JLOC1	JLOC1_59.1	1551	8e-25	1481 - 1540	100	60 / 60	plus
Harvest21	ABC03950	525	1e-23	12 - 71	98	59 / 60	minus	ABC03950
Harvest35	U35_15824	704	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_15824 704 Hv_44K_v2
TAAGAGACTATGACATGGAGAGATTCCAGTTGTGCAATCACTTTCAATTTGATAATCCAG
TGAATCATACATCGCTTAGTCCCGACAGAAAGCTTGTTCTCGCCGTGGGGGACCATCCTG
ATGGTTTACTTGTTGATGCGAATTCAGGAGAGACGCTTCATTCCATGAAAGGCCATCATG
ACTTCTCGTTCGCATCAGCCTGGAGCCCTGATGGACGAACATTTGCTACCGGGAACCAAG
ACAAGACATGCCGAGTCTGGGATCTGAGAAATCTGTCGAAAGCCGTCCATGTACTGAAGG
GTAACCTTGGGGCCATTAGGTCGATCCACTTCACTTCTGACGGGCAGTTCCTGGCGATGG
CAGAACCGGCGGACTTCGTCCATATCTTCGACACCCAGAGCGATTACAACCAAAGGCAAG
AGCTGGACTTCTTTGGCGAGATATCTGGGATCTCCTTCAGCCCGGACATGGACGCCCTTT
TCGTCGGTGTGTGTGATAGAACGTATGGCAGCCTCCTCCAGTATGGTCGTTTACATAATA
ACAACCTGTAGTTCGTGTACCATATGGAGCTGTTCCCCGGCATCTATTTCCCAGAAGTCT
AGAACATAACTTGTCTGTCTAGAACATAACTTGTCTGGGTGTTACTCATTTCTCAGCTGT
ATATAAATAAATATGCATGTGTGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48964.1	447	3e-104	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g56640.1	447	2e-110
Arabidopsis v10	AT1G55680.1	445	7e-90	Transducin/WD40 repeat-like superfamily protein \| chr1:20804988-20807294 REVERSE LENGTH=445