barSeed - Barley Seed Development Database

Probe CUST_29131_PI390587928

Source Contig U35_15825

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29131_PI390587928	Hv_44K_v2	CCGCTTCAGCTGCCTTATGTTCTGCCAGTTAATTGGATGTAGTTTGATCTCTGCAAAAAA	1871	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50055.1	2354	3e-21	1123 - 1176	100	54 / 54	minus	ABC03951
Harvest21	ABC03951	1942	3e-25	1872 - 1931	100	60 / 60	plus	ABC03951
Harvest35	U35_15825	1942	3e-25	1872 - 1931	100	60 / 60	plus

Contig Sequence (1942 bp)

>U35_15825 1942 Hv_44K_v2
GCTCCTCGCAAGGGCGAAGGAAAAAGGGAAGGCGCTCGCCCCGTCCGTCTCTCCTATATT
TCCCGGGGGGATCCATCTCCGCGCGGCTTGGGCGGCGTCTTCTGAGGCGCAGGCTTTCCC
CCCCGTCCGCTCCGCTCCGCCCCGGCGGCCGATTCGCCGCCCCCTCGCCTCGACGTCCAG
GTCAGGGACGCTTCTCTCCTAGGAGAGGATCAATGTCTAATTATCACGACGATCATGTCG
AAGACATGGAGGATGATTATGATATGGACGACCCCGCTGAGGACATGATCGACGCCCACC
ATGAGCGAGGTTTAAGGGACTCCGATTCGGAGGATGAAGAGTATGCCCACTCGAATGATA
AAATCCCAGATACTTCGGCAGCGGATGCAAGAAAAGGAAAAGACATCCAAGGAATACCGT
GGGAGAGGCTAGCTATCACACGGGAAAACTACAGAAAGACCAGATTAGAGCAGTACAAAA
ACTATGAGAATATTCCTAATTCTGGAGAAGCAGCAGCCAAGGAATGCAAACCGACTGAGA
AAGGTGGAACATATTATGAATTCAGACAAAATACTAGATCAGTAAAATCAACCATCCTAC
ATTTTCAGCTGAGAAATTTAGTATGGGCTACATCCAAGCATGACGTCTACCTAATGTCAC
ATTACTCAGTACTTCACTGGTCAGCGTTGAGTGGTGTGGATACTGAACTTATGAATGTCC
AAGGTCATGTGGCACCGAGGGAGAAGCACCCTGGAAGTCTATTAGAGGGTTTTTCTCAGA
CTCAAGTTAGTACCTTGGCAGTCAAGGACAATTTACTGGTAGCTGGCGGATTTCAAGGGG
AGCTAATCTGCAAGCATCTTGACCGAGAAGGAATAAGCTTTTGCTGTCGAACAACATATG
ATGATAATGCCATTACTAATGCAGTTGAGATATTCAATACTTCTAGCGGTGCTGTTCATT
TCATGGCATCGAATAATGACTCTGGTGTAAGAGACTATGACATGGAGAGATTCCAGTTAT
GCAAGCACTTTCAGTTTGATTGGCCAGTGAATCATACATCACTGAGCCCTGATGGAAAGC
TTGTTGTTATTGTGGGGGATGATCCTAATGGTTTACTTATTGATGCCAATTCAGGAAAGA
CTCTTCATTCCATGAAAGGTCATCATGACTTCTCATTCGCATCAGCCTGGAGCCCTGATG
GCCGAACATTTGCTACTGGGAACCAAGACAAGACATGCCGAATCTGGGACGCGAGGAACC
TATCGAAAGCAGTCCATGTATTGAAAGGTAACCTTGGAGCCATTAGATCGATCCGCTTCA
CGTCGGACGGGCAGTTCCTGTCGATGGCGGAACCAGCGGACTTTGTGCACATCTTCGATG
TGAAGAGCGACTACAAGAGAAGGCAAGAGCTGGACTTCTTTGGTGAGATATCTGGGATGT
CCTTCAGCCCGGACACAGACGCCCTTTTCGTGGGCGTGTGGGATAGAACGTATGGTAGCC
TCCTCCAGTTTGGGCGCCTGTATAACAATTGGTATCATGACTCGCTGCTTTGAGGCGAAA
GCGGAGCGGATGTTGGACCTGCTTGTCCTCCCCCTCAGCTGCACCGAATGGTTGGTGTGG
CATAAGTTAGGCGTCTCCCCAAAACCGGAACTTCTCGAGTTGACCTGCATAATTCAAATT
AATAAATGTTGTATCGTTGTATGTGTATATAAACAAATGTACAGATGCATATAGCCTATG
TCTGGGGTAGAGTGCATCTCATCATATATGTTTAGACTCCAGTTAGTTGTAAGGCCCTTG
ACTCAAGTCAAGTCGAGTGACGCTGTGAACATTGTCGTCGATGATGGTGTGACCTGTGAC
CTAAACGACATCCGCTTCAGCTGCCTTATGTTCTGCCAGTTAATTGGATGTAGTTTGATC
TCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g48964.1	447	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g56640.1	447
Arabidopsis v10	AT3G13340.1	447	Transducin/WD40 repeat-like superfamily protein \| chr3:4332370-4334603 FORWARD LENGTH=447