barSeed - Barley Seed Development Database

Probe CUST_29117_PI390587928

Source Contig U35_27809

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29117_PI390587928	Hv_44K_v2	GCAGTTGTTTGAGCGGCAGCCGGCAGCACTGAAATGCAAATTGTTTTATTGCGCAAAAAA	543	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.213	3.074	1.597	0.521	0.181	0.307
Raw	215.456	475.739	208.731	103.729	13.184	24.502

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3792.1	2030	6e-21	1744 - 1800	98	56 / 57	plus
Harvest21	ABC24996	613	3e-25	544 - 603	100	60 / 60	plus	ABC24996
Harvest35	U35_27809	613	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_27809 613 Hv_44K_v2
AAGCACAAGCTTGTTAAAAAGACTGGAGGCGCATATTATTCTTTCAACGAACAGCAGTTC
CATGGTAAAGATGCCGTTAAATCTTTCCTTACTAAAAACGAGGGTGCTGCGAAGGAACTG
GAGATGGAGCTAAGGAGATTGATCCAGACTGAACCACCGAGAAAGCAAGAGGCTGAAGAC
GACATGCTGGGCGATCTGCCTGAGGAGACTGTCAGGCCTGAAACATCAGAAGAAGAAGAT
CTGGCTGCTATAATCGAGGCTTGAACCAGCGATGATAGGTTAGCTAGGAATGTTACTTGT
GGCACGAACTGTGTTCTGGACTTGGACATTGAGTTCTTACTGCACTGGAAAACGAGGAGG
TGGCTTCTTAGAGTAGACACTGGGTGTGTTTTGGGAGGAGGGGGAAGGGCTCAGGATTCA
GTAGCATGTAATCATGTACTGTATATATGTTGCATGCCTTGACTATTCTTGACTGAAGAG
CTGACCTGCTGCTGCTTCTGGGATGAATTTTATTCTCAGGCTTCATTTCAGCCTTACCTG
AGAGCAGTTGTTTGAGCGGCAGCCGGCAGCACTGAAATGCAAATTGTTTTATTGCGCAAA
AAAAAAAAAAAAA

Homology of Contig U35_27809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None