barSeed - Barley Seed Development Database

Probe CUST_29115_PI390587928

Source Contig U35_15832

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29115_PI390587928	Hv_44K_v2	ACACTCGACAATGCAAATGCAATATTGTTTCTATTTGGTGTTCCACTGAACTTCGAGAAA	807	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75001.1	1813	2e-24	1703 - 1762	100	60 / 60	plus	ABC09134
JLOC1	JLOC1_50005.2	1418	8e-25	1218 - 1277	100	60 / 60	plus
JLOC1	JLOC1_50005.1	1903	8e-25	1703 - 1762	100	60 / 60	plus
Harvest21	ABC09134	2171	1e-23	2049 - 2108	98	59 / 60	plus	ABC09134
Harvest35	U35_15832	881	3e-25	808 - 867	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_15832 881 Hv_44K_v2
GCAGGCTGCAGTGAGCAAGAACATGGTGGAGAGCCTGTCGGTGCCAGCATTCCGTGTTGG
TTACCCCATTCTCACTGATAAGCTTGACGAGCTGTATGAGAAGGTCAAGCCAAAGGGGGT
AACGATGACTGTGTTGCTTGCGAAAGCCGCTGCTATGGCGCTTGCACAACACCCTGTGGT
GAACGCTAGCTGCAGGGATGGGACGAGCTTCACTTACAACAGTTCCATCAATAGATACAG
CCACAGCAATGTTGAGCGGCCGCTCAAGAAATTAACCACCTCATTGTTGTTTCCTTCATT
TTAACAACTTACAAGAAATTAACCAGCCATTGTTGCCTACTATCTTTCTTCTTTTCTTTC
CCCACCCACTTCATCTATAGATTGATTGATTTCACAACACCAGAACCAAAAAATTACAAC
AACAAAGTATAGGACACGCCAATTAATCACCTGACCTTATTCTATTGCATCGTTGTGCAA
AGCTCAGGCGTCTCTGGTCGACAAATGGCTCAAGATAAATGCACTCTGCCCTCTGTGCAA
AGCCGAGATAGCAAGCTCGTCTGGCACATCTGATAATCGCCACATCGACCATACAGTACC
GACGCAGGAGATCGAAATGCATTAGATTGGTCCGCCTTCCATCTTCCATGGCGATACATA
AGCATATAGTTGCTCGCCGTGCAGGTCTCCATGTATAAAGTTGATGCTTTTGATCTATGG
ATTGTAGCGATGATGTCCCAAGTTTTTCTTTTTTGTCCCTTTTTCTTTATCGTGGAGGTG
GAGAAGTTACAGCTCTTCTCGCTGTCAACACTCGACAATGCAAATGCAATATTGTTTCTA
TTTGGTGTTCCACTGAACTTCGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None