barSeed - Barley Seed Development Database

Probe CUST_29113_PI390587928

Source Contig U35_15834

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29113_PI390587928	Hv_44K_v2	TGGAGAAATGCTGGCCCAGGCCCAGGTATATATATGTTGCCCTTTCACTGTTGTAAAAAA	2040	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.049	1.200	1.254	1.146	0.531	0.471
Raw	521.309	923.771	865.969	1211.595	200.241	194.006

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09134	2171	3e-25	2101 - 2160	100	60 / 60	plus	ABC09134
Harvest35	U35_15834	2111	3e-25	2041 - 2100	100	60 / 60	plus

Contig Sequence (2111 bp)

>U35_15834 2111 Hv_44K_v2
CCGAGATGGGTTAAGACCCTGGCCACCAACCCCTCCTCGTCTCCGCCCTCCCCCACCCCA
CCGCACCCAGCCCACTCCTCGCCGCCGCCCGCCCGCCCGCCCGATCGCCGCCGCGCGCAG
CCGACCTGCCCCGCTGCACTCTTCGCGCCGCCCGGTGGCCGGATTCCGCCGTCCTCCCTC
TCCTCGCGCGCCGCGCCAGCTGCCTTGCACAGTGAGTAGTAGACAGTCCTCTCCCCGCCG
CCAGCTCCGTCAGGTCTACCCGGCGTCGCCTCCCCCTCCCCGCCGCTGCTCCTCACGCCG
TCGGCGTTCACTTCGCCGGGTTTGCTCCAGAGGAGTGCCGGCTGTCTGTCCGTCGATCTA
CTCTTATAGGCGCTGCTCCAAGGCTGCGGCCAACTATCATTGATTATATTAACCGAGAGA
CTAGTTTGAAGCTTTGGATTATCTGTTGAAGCATCCAGACAAATCCTTTGTTAGAACATA
CATAGCAGGAGGGCGTTGAAATGTGGCAGCTTGCCTCCATCCTTTGTTACTTCTGAATAC
TGAAGAGCTTAGCTTATCATATTCCTCAAAATTGAAGTTCATACCGCTATGCAATCTGGG
ATGGAACAAACAACAGGGGTAAGTGGTCATGAACATGTAATTGATATTCCAAGGGATAGC
GGTCCTTCTGCCTCGGCATCGCACAGTGTTGGTAGAGAGAACCATGAAGAGCTGAATCCT
GTGGATAGACCTTCAACAAGAGCTGCAACGTCTGCCTTGCAGCCACCATCAGCAATAGGC
CCTCCTCATGCAGACACTGCTTCAGGCACTAGGAGACGTGATAACTATGGTCGGCGACAT
AGGAGCCCTTTGAACTCTGGACTATGGATTTCGGTTGAAGTTATCGTTAACGTTAGCCAA
ATTGTTGCTGCCATTGTTGTGCTATCCCTGTCAAGGAAGGAACATCCACAAGCTCCATTG
TTTGAGTGGGTCATAGGTTACACAGTCGGTTGTTTTGCCACTTTGCCACATCTTTATTGG
CGCTATATACACCGTAATATCGTGAACGGTGAGAATGAGCCAGCACACTCACTTCAGGGC
TCCTCGCAGAACAACTCGACTGAGCCCACCCCTGCAAGTGTATCAGAAAGGCGAAGGAAT
GCGGCACGAAATGCAGTTCTGGCTAACCCAAGGATTAATGCACTTTTTGACCACTTCAAG
ATGGCCTTGGATTGTTTCTTCGCCGTGTGGTTTGTTGTAGGAAATGTGTGGATATTCGGT
GGGCGTTCTTCGGCTGTTGATGCTCCAAACTTGTACAGGTTATGCATCGTGTTCCTCACC
TTCAGCTGTATTGGGTATGCCATGCCTTTCATCCTCTGCGCAATGATATGCTGTTGTCTC
CCCTGCATTATATCCGTCATGGGCTTCAGAGAAGACACAAACAATACAAGAGGGGCCACC
TCGGAATCCATCAATACTTTGCCAACTTACAAATTCAAAACTAAGAAGCGCCGCCATGGT
TCAAGTAATGAAGCCGAAGGCCAAGAGGGAGGTATAGTAGCTGCAGGGACTGACAAGGAG
CGGTCGCTTTCTGCCGAAGATGCTGTTTGCTGCATCTGCCTTGCCAAGTACGCACACAAC
GAAGAGCTTCGTGAACTTCCCTGCACACACTGTTTCCACAAGGAATGCGTCGACAAATGG
CTCAAGATAAATGCACTCTGCCCTCTGTGCAAAGCCGAGATAGCAAGCTCGTCTGGCACA
TCTGATAATCGCCACATCGACCATACAGTACCGACGCAGGAGATCGAAATGCATTAGATT
GGTCCGCCTTCCATCTTCCATGGCGATACATAAGCATATAGTTGCTCGCCGTGCAGGTCT
CCATGTATAAAGTTGATGCTTTTGATCTATGGATTGTAGCGATGATGTCCCAAGTTTTTC
TTTTTTGTCCCTTTTTCTTTATCGTGGAGGTGGAGAAGTTACAGCTCTTCTCGCTGTCAA
CACTCGACAATGCAAATGCAATATTGTTTCTATTAAAAAAAAAAGGTGTTCCACTGAACT
TGGAGAAATGCTGGCCCAGGCCCAGGTATATATATGTTGCCCTTTCACTGTTGTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_15834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54624.1	404	0.0	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi1g70460.1	408	0.0
Arabidopsis v10	AT4G32600.1	453	2e-142	RING/U-box superfamily protein \| chr4:15724010-15725737 FORWARD LENGTH=453