barSeed - Barley Seed Development Database

Probe CUST_29111_PI390587928

Source Contig U35_15836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29111_PI390587928	Hv_44K_v2	CTTGTTCAGGGTGTAGTTGCAATACCATATATCCATTACTTTGTATTGTACGCCAATAAT	1893	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12188.3	1956	2e-24	1877 - 1936	100	60 / 60	plus	ABC04155 ABC49719
MLOC	MLOC_12188.4	2367	2e-24	2290 - 2349	100	60 / 60	plus	ABC04155 ABC49719
MLOC	MLOC_12190.1	702	2e-24	412 - 471	100	60 / 60	plus	ABC04155 ABC49719
MLOC	MLOC_12190.2	4688	2e-24	411 - 470	100	60 / 60	plus	ABC04155 ABC43329 ABC49719
JLOC1	JLOC1_8168.1	2201	8e-25	1994 - 2053	100	60 / 60	plus
Harvest21	ABC04155	2013	3e-25	1894 - 1953	100	60 / 60	plus	ABC04155
Harvest35	U35_15836	2057	3e-25	1894 - 1953	100	60 / 60	plus

Contig Sequence (2057 bp)

>U35_15836 2057 Hv_44K_v2
GGAGAGGTGGGGAAGGTCAAGCCGAGAGGAGACGCACAGATCCCTCCCTCTCCTCTGCAC
ACCTCTCCTCTCCTCTCTCCCCCTCGACGCGGCAAAAACAGGGAGGAGAGAGAGACAGAC
AGAGGGAGGGAGGGAGCCCGAATCCCTGCGATCTCCCCTCCCGGTCGGAGGATCCGGCGA
TCAGCCATGAACGAGAAGGCCTCCGTCTCCAAGGAGCTCAACGCCAGGCACAAGAAGATA
TTGGAAAGCCTTCTGCGGTTGCCGGAGAACAGAGAATGTGCAGACTGCAAATCAAAGGGT
CCTCGATGGGCAAGTGTCAATCTTGGGATCTTTGTATGCATGCAGTGTTCTGGAATTCAT
AGAAGCCTTGGGGTACACATATCAAAGGTAAGGTCTGCTACTCTAGATACATGGCTGCCA
GAGCAAGTTGCATTTATTCAATCTATGGGAAATGAAAAGGCAAATGGCTATTGGGAAGCA
GAGCTGCCCCCTAATTATGACAGGGTTGGGATAGAAAACTTCATCCGTGCGAAATACGAG
GACAAGAGGTGGATACCAAGGAATGGGACATCAAAACTGCCCTCTGCTGCTCGAGATGAA
AAGAGCTCTGAATCTCTGGCCAGTCATGCTAACAGGGGTGGGCACGCTCAAAAATCTTCA
TTTGAGCAACACCGTGTTTCACCAGCTGCTACGAGAAAAGCTACTCCAGTGTCTTCTAGG
ATGCACACGCAGGCATCACCTCAGCCAAAAGCAGAACTACCAGTTCCCAAGGTTGCTTCG
CCTCCTCAGCCAGCAAAATCTCCTGCTAAAGTTGATGTGACACCCCCAAAAGTTCATCAG
CCATCAGTTGCACCCCCTCCGAAAGTTGACTATGCCATTGACCTCTTTAACATGTTATCG
ATGGACGGAACAACTGAGAAAGAACCAGAGTCATCTTCCCACGACGATAATGCTTGGGAT
GGGTTCCAGTCTGCAGAACCAGCACCTAACTCCGAGAAAAAGGATACTGCTAAGCCAGTA
GAAAGTAAGGCCCAGTCTACATCAGGAATAGAAGACTTATTTAAAGACTCTCCAACTGTG
ACAGGGTCTTCAGCTCCAGTTGCTTCCAAATCAAACCCACAGACAGATATCATGAGTCTG
TTTGAGAAGTCGAATATGGTATCACCATTTGCTATCCATCAGCAGCAGCTTGCTTTTATG
ACCCAGCAGCAAGCTTTACTGATGGCTGCTCTTAAATCTGGAAATGCACCCCAAATGGTT
CCGGGGAATGCACCCCAAATGGTTCCTGGAAATGCCAGTGTGCTAAATACTAACGGTTCC
AGTGCCCCTAATGGAAGCTTGCCTTCACATAGCTGGCCAAATTTAGGTTATCAAAACCCT
GCATCAATTCAGGCAGCAGCACCACAGAATGGTGTCGCCAAGGCTGGGAACAACAATCAG
GACTTCTTTTCTGGAAACTTTGGTTTTGGTTCGCCCAGCGTGCCAGCAAATGGGGTCACA
ACTGCAAGTTCTAACAAGAGCACATCGAGCCCTACCTCTTCTACTACCATGCCCTCTCAA
TCAGGCAAAGAGTACGATTTTTCCTCATTAACTCAAGGAATGTTCTCGAAGCGATGAATG
GCTTGGAATGCTTGGAAATGGATGAGAGAGGGGCCTCCATTGGGCGATAAGCACGGCAGA
TTTAGGAGAAGGTTGGGGGCGCTTGTACACTGTTTTACCGAGGCAGCTTTGCCAATTGTG
GATACATAGTTACATCACCTTGTGGGCCAACAAGTGCGGATATGGCAGAAAACTGCTCAT
GTTGTTTCCTACAGCTGAATAGTCTCATTGTTACAGCGATGCCAAAAACTTCAAACAGAG
GATTCCCTTGTGGGCCTGTTGGAACTTTTTTCTCTTGTTCAGGGTGTAGTTGCAATACCA
TATATCCATTACTTTGTATTGTACGCCAATAATTTTATTCTGTTGTGTTCCACATATAAA
AAAAAAAAAAATTGTATTGTTGTGGCTTGCCCTTTAAATGCACTGAATGCTGTTTTAACT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37650.1	477	0.0	protein\|GTPase-activating protein, putative, expressed
Brachypodium v1_2	Bradi1g24680.1	474	0.0
Arabidopsis v10	AT5G54310.1	483	1e-113	\| Symbols: NEV, AGD5 \| ARF-GAP domain 5 \| chr5:22057262-22061066 REVERSE LENGTH=483