barSeed - Barley Seed Development Database

Probe CUST_29105_PI390587928

Source Contig U35_27814

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29105_PI390587928	Hv_44K_v2	GCTTCCTTTTCCTTCGTCTGGTCTGATCTTGATCGGCATGGACGCGTACGTGCTGTTCCG	117	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367084	1017	2e-24	130 - 189	100	60 / 60	plus	ABC10192
MLOC	MLOC_66128.1	3871	2e-24	597 - 656	100	60 / 60	plus	ABC11074
MLOC	MLOC_66127.1	968	2e-24	615 - 674	100	60 / 60	plus	None
MLOC	MLOC_66128.2	5072	2e-24	481 - 540	100	60 / 60	plus	ABC11074
JLOC1	JLOC1_43562.1	3596	8e-25	3234 - 3293	100	60 / 60	minus
JLOC1	JLOC1_43561.1	2416	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC30178	339	3e-25	118 - 177	100	60 / 60	plus
Harvest35	U35_27814	339	3e-25	118 - 177	100	60 / 60	plus

Contig Sequence (339 bp)

>U35_27814 339 Hv_44K_v2
CTCTCCTCTTCTCCTCTCCCCCTTTATAGCCGCTGCGCAGCGTTGATCCTTCATTCATCC
ATCGCCAACGACGCACAATCACAATCCCTCGTCTCGCGGGTTCATCGATCATCTGCAGCT
TCCTTTTCCTTCGTCTGGTCTGATCTTGATCGGCATGGACGCGTACGTGCTGTTCCGCCG
CGCCGCGGGGATGATGATGGTGGCGCCGCCCANGGCCGCCGCCTACGACGAGCAGGACGA
GGACATCGGATCCGCGTCCGACTCAAAGTGCACGTCGCGGAGCTCGGCCTCGGCGGCCTC
CTCTTCCTCCGACCTCGCCGACGACGCCAGCTCCTCCTC

Homology of Contig U35_27814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None