- Probe CUST_29104_PI390587928
- Source Contig U35_27815
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29104_PI390587928 | Hv_44K_v2 | GCTGCACATGTATCACTACTACGAGCACAAGAACAACTCACATGTTTGAATGGGAAAAAA | 611 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.631 | 11.070 | 1.506 | 0.687 | 0.813 | 0.675 |
| Raw | 90.039 | 164.874 | 20.026 | 13.998 | 4.559 | 4.002 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365154 | 2306 | 7e-23 | 2216 - 2272 | 100 | 57 / 57 | plus | None |
| MLOC | MLOC_3714.1 | 1863 | 7e-23 | 1061 - 1117 | 100 | 57 / 57 | minus | ABC13990 |
| MLOC | MLOC_3713.5 | 2547 | 7e-23 | 1844 - 1900 | 100 | 57 / 57 | minus | ABC13990 |
| MLOC | MLOC_3713.2 | 2612 | 7e-23 | 1909 - 1965 | 100 | 57 / 57 | minus | ABC13990 |
| MLOC | MLOC_3713.4 | 2410 | 7e-23 | 1610 - 1666 | 100 | 57 / 57 | minus | ABC13990 |
| MLOC | MLOC_3713.1 | 2867 | 7e-23 | 2780 - 2836 | 100 | 57 / 57 | minus | ABC13990 |
| MLOC | MLOC_3713.3 | 2828 | 7e-23 | 2026 - 2082 | 100 | 57 / 57 | minus | ABC13990 |
| JLOC1 | JLOC1_2236.2 | 2364 | 4e-23 | 1600 - 1656 | 100 | 57 / 57 | minus | |
| JLOC1 | JLOC1_2237.1 | 3407 | 4e-23 | 709 - 765 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_2236.1 | 2786 | 4e-23 | 2022 - 2078 | 100 | 57 / 57 | minus | |
| Harvest35 | U35_27815 | 677 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus |
Contig Sequence (677 bp)
>U35_27815 677 Hv_44K_v2 CAGGGCACGCCGGGGTACGTCGACCCGGAGTACCACCACAGCTTCCACCTCTCCGACAAG AGCGACGTGTACAGCTTCGGCGTCGTGCTGCTCGAGCTCATCACCGCCATGAAGGTCGTC GACTTCGGCCGGCCGGCCAACGAGGTCAACCTGGCGTGCCTCGCGCTCGACCGGATCGGC AAGGGGAGGGTCCACGAGATCGTCGACCCGGCGCTCCTCCGCCACGGCGAGGACTGGGTC ATGGAGTCGGTCCGGCACGTCAGCGAGCTCGCATTCCGGTGCCTGGCGTTCGACAAGGAC GTCCGGCCGTCCATGAGCGAGGTGGCCGCCGAGCTGTGCCGGATCAGGGACGCCGCCCCA GACTCCGGCATCGCCGACGCGGGCCTCGATGGACCGGACGCCGCGGCAAGGAAAGCCCGG TCGCCGGTATCGGTGCAGGACGTCTGGGTCAGCGACCGGAGCTCGCCGTCGACCAACGGC TCCATGCCACGCTTTGCGTAGCCAAGTTACATCCCACGTGCACACAAAGTAGATGAAAAA TGTAACTTAAACAATTTTTTGGGGGTGAAGTTTTCCATGATGATGATCGTTGTAGTACTA GTACCTGTACAGCTGCACATGTATCACTACTACGAGCACAAGAACAACTCACATGTTTGA ATGGGAAAAAAAAAAAA
Homology of Contig U35_27815 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g40419.3 | 719 | 3e-75 | protein|protein kinase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi4g02850.1 | 706 | 1e-79 | |
| Arabidopsis v10 | None |