barSeed - Barley Seed Development Database

Probe CUST_29101_PI390587928

Source Contig U35_27818

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29101_PI390587928	Hv_44K_v2	GTACTCCGTGCAACTACTTTCTCCGTTCCTAAATATAAATCTCTATTTCGCTAAGAAAAA	482	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.181	4.670	1.377	0.698	0.277	0.244
Raw	152.223	205.300	55.679	49.902	5.616	5.497

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3766.1	2378	2e-23	36 - 93	100	58 / 58	minus	ABC22626
MLOC	MLOC_3766.2	2472	2e-23	36 - 93	100	58 / 58	minus	ABC22626
MLOC	MLOC_3766.3	2167	2e-23	36 - 93	100	58 / 58	minus	ABC22626
JLOC1	JLOC1_2269.3	2341	1e-23	2147 - 2204	100	58 / 58	plus
JLOC1	JLOC1_2269.2	2130	1e-23	1936 - 1993	100	58 / 58	plus
JLOC1	JLOC1_2269.1	2022	1e-23	1828 - 1885	100	58 / 58	plus
Harvest21	ABC22626	554	3e-25	483 - 542	100	60 / 60	plus	ABC22626
Harvest35	U35_27818	554	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_27818 554 Hv_44K_v2
CTCTCACGGCGCATCACCGGCGAGGACAGGGGATTCACGCAGCTGCAGCGCATCGGCGCC
GGCCTCGCACTGTCCACGGCCGCCATGGCGTACGCCGCGTTGGTCGAGGCAAGGCGACTG
GCGTCCGCGACCTCGATGAGCATCATGTGGCAGGCGCCGTGCTACTTCGTGCTGGGCGCG
GCCGAGGTGTTCGCCAGCATCGGCATGCTCGAGTTCTTCTACGACCAGTCCCCAGGGTCC
ATGAAGAGCCTGGGCGCCGCGCTTGCACAGCTCGCCATCGCTGGTGGCAGCTACCTCAAC
TCCGCCCTGCTCGGCGCCGTCGCGTCGGCCACGGGGTGGATCCCGGACGACCTCGACCAA
GGCCACCTCAACTACTTCTATTGGTTCATGGCTGCTCTCAGCGCGCTCAACCTGTTGCAG
TTCGTCTACTGCTCTACCCGACACAAAAGATAAAGATCATCACTTTCTTAACTACTCAAT
ATGTACTCCGTGCAACTACTTTCTCCGTTCCTAAATATAAATCTCTATTTCGCTAAGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_27818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g21010.1	586	2e-55
Arabidopsis v10	None