barSeed - Barley Seed Development Database

Probe CUST_290_PI390587928

Source Contig U35_20059

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_290_PI390587928	Hv_44K_v2	GTGTTAGCCATTGTTCATTGTTGAAAGATCAATGCAGCTTGCTTCATTTTTCTCCAAAAA	567	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.235	1.298	1.066	0.898	0.334	0.438
Raw	359.480	599.393	430.061	582.394	73.949	107.519

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373522	4270	9e-22	4214 - 4268	100	55 / 55	plus	ABC13017
JLOC1	JLOC1_9209.1	1725	5e-22	1509 - 1563	100	55 / 55	plus
Harvest21	ABC13017	639	3e-25	568 - 627	100	60 / 60	plus	ABC13017
Harvest35	U35_20059	639	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_20059 639 Hv_44K_v2
AAGGATCAGTCCTGCTACTGGAGATTTGTCCTGTTGAATCTCTCTGTTGTTCGAGCCGAG
ATCCTGCTTGATGAGGCTGGTGATGGTGAAGTGGCGGAAATCGATGCTGTGCTTGAGGAA
GCTGCTGAGCTTGTTGACGACTCTCAGCCCAAGAAGCCTAGTTATTACAGTACGTATGAA
GTTCAGTACACGCTGAGGAGGCAGGACGATGGATCGTGGAAAATCTGCGAGGCTGCTGTC
CGGGACCTGTCGTGATTTCTGCCAGAAGGACGACTAACGCATCATCTCATAGGACACGGG
GCCATGTTTAAACAAAGTTCCAACATATTAGAATTTTGTAGTTCACTAGCATTAGATCAC
CATTGAACCAAATTCGAATGCACGGAACCGTTCGATGATCTGTGTTTGGGATGCTCTAGC
TGCTCGTGGTGACTTGCATCAGGATTCGACACCGATACCCGCTGATTTGCTACGTTAGTA
CAGGATGCTAACCTCTGCTGATTTCACATACCTTTCATTTCTTTCCGCCTGTCGGGCCTT
GGGTGCCCCGCGCGGTGTAACTGAATTGTGTTAGCCATTGTTCATTGTTGAAAGATCAAT
GCAGCTTGCTTCATTTTTCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None