barSeed - Barley Seed Development Database

Probe CUST_29093_PI390587928

Source Contig U35_15846

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29093_PI390587928	Hv_44K_v2	TTTATGGTGCAGCTATCCATCTATCTAGAGGAAAAGTGGGGTGTTGGGCGAGCTAAAAAA	1223	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.318	2.881	1.026	0.773	0.942	0.839
Raw	24.976	32.848	10.231	11.112	3.117	3.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_15846	1294	3e-25	1224 - 1283	100	60 / 60	plus

Contig Sequence (1294 bp)

>U35_15846 1294 Hv_44K_v2
GTTTCGTTTTGTTTCCTTGGCGTGAAACCGTCATCCATCGACGACTTCCGTCGCGCCCGA
GGCAGCAGCGAGGCGCCCGAAACAACTGTCTCCATGGCGGCAACGACGACGGCGACGCCG
AGGCGGGCGCCGGCCGCCTTCGTCGTCCTCCTCATCCTCGCGACGGCGTCCGGGGCCTCC
GCCAGGGGCGACGGCAACGGCGTGTACGAGCCGTGCGCGGACGCGACGGTGAGCCGGGGC
GACGGGTTCACCTTCGGGGTGGCCTTCGCGGGGCGCGACGCCTTTTTCTCCGGCGGCGTG
CAGCTCTCCCCCTGCGACGGCCGCCTCCCCCTTCAGAACGCCGCCAAGCTCGCGCTCTTC
CGCCCCACCGTCGACGAGATTTCGCTCCTCACCGTCAACGCCTCCGGCGCCGGCGACCTG
ACGTCTGCTGGTGGATACATGGTGGCCTTTGCAGGGAGGAAGTTCGCAGCAAGGTCGCCC
CCCGTGTTCGTCGGCAACAGCTCGTATACGGTCACCGGCTTCACCCTGGTGTTCGAGTTC
CACAAGGGCACGCTCCAGAACCTCTTCTGGAAGGCGGACGGCTGCTCGTCGTGCTCCGGG
CAGGCCAACTTCGGGTGCGTCGAAAACAGCTGCGCGATCAAGACGTCGAGCTGCAGGGGC
GGCAATGGCGGCGGCGGCGCCGGGCAGGTGGACTGCAGCCCCGGGATCCAGCTGGCCTTC
TCCGGCACCGACAAGCACGAGGCGGTGCTCAACTCGTGGTACGAGGTGTCCAAGCTGAAG
CAGTACTCCCTCTTCGGCCTCTTCTCCAACCTCAAGGACTCCCTCGCGGGCCAGTTCAGC
AACTTCTTCTAGCGTCGTCCGTCTTCGTCCCGGCCAATCTTCGTCTTCCTCGTGCAGCTT
CTGAAGGCGGTCACACCCGTTGCATCATATTCATATTGTGTCGTCATCCGTGTACCGTTT
GTTCATGGCAGTATCGTGGTATTATTATTGCCATGTCACCCGTACCGTACGTATACTGCA
TGCTTGTAACCAGATGTGCTTTGTGTATCGATCATCGGCTGCTAGCCTAGCCTGCTACGT
ACGCTCGTTAATTGTTCGGTATAGAGACAATGTAAGCTACGAAACTAGTGTATGTATTTT
TGTAATGGAATGGAGTTCGTGTATTTTTGTGAAAAAAAAAAACGGACGAGATCGTAGTTT
GAAACTAGCACATCGTTTGGCTGTTTATGGTGCAGCTATCCATCTATCTAGAGGAAAAGT
GGGGTGTTGGGCGAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57320.1	254	1e-113	protein\|expp1 protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g06360.1	249	7e-123
Arabidopsis v10	AT3G11800.1	246	2e-81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr3:3726154-3727562 FORWARD LENGTH=246