barSeed - Barley Seed Development Database

Probe CUST_29087_PI390587928

Source Contig U35_27824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29087_PI390587928	Hv_44K_v2	GATAAACCATTGAATCGTTTACCTATAGTTGCCCAGAAGCCAAAGAAGAATAAGGGTCAG	499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4537.5	2815	2e-24	400 - 459	100	60 / 60	minus	None
MLOC	MLOC_4537.1	3839	2e-24	1541 - 1600	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.2	3848	2e-24	1536 - 1595	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.3	3864	2e-24	1536 - 1595	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.4	4002	2e-24	1536 - 1595	100	60 / 60	minus	ABC24293
JLOC1	JLOC1_2837.2	3896	8e-25	2287 - 2346	100	60 / 60	plus
JLOC1	JLOC1_2837.1	3869	8e-25	2260 - 2319	100	60 / 60	plus
Harvest21	ABC24968	562	3e-25	500 - 559	100	60 / 60	plus
Harvest35	U35_27824	562	3e-25	500 - 559	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_27824 562 Hv_44K_v2
GGAGGCCATGTCATTGCTTAAAAAGGCAAAGCTACTTGAGAAGGATTTGGAAACTGAACA
GCCGGAGTCGGAGGTCCTTTTTCCAGGACAGAAAATTACACACACTGAAGATATCAGAGT
CACAGAGATTAACATGCGTCGTGTATCAGCACCGAAAAGTAAGCTTGCAATTCAGAGGGA
GCTGCTAGCTCTGAAAAAGAAGGCACTAGCGTTGAGAAGGGAAGGAAAGGTTGATGAGGC
TGAGGAAGAGTTGAAGAAAGGCAGTATTCTCGAGAAGCAACTTGAAGAACTTGAAAGCTC
TTCCAATAGATCTGTAGCCAGGGAAAACATGGGCTTTAGTTCGAAGTCCCCACTTAATGC
TGAACCCCCTAGTCTGGATTTTGCTGATGAAAGCTATGAACCTGAGGTGACAGACAATGA
CATGCAGGATCCAGCATTGCTGTCTGTGTTGAAAAATATGGGATGGGAAGATGATGATAA
TGATTCTGTGAAAACAACAGATAAACCATTGAATCGTTTACCTATAGTTGCCCAGAAGCC
AAAGAAGAATAAGGGTCAGATT

Homology of Contig U35_27824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46710.1	1143	6e-52	protein\|expressed protein
Brachypodium v1_2	Bradi3g47270.1	1090	1e-60
Arabidopsis v10	None