barSeed - Barley Seed Development Database

Probe CUST_29086_PI390587928

Source Contig U35_29934

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29086_PI390587928	Hv_44K_v2	TTCAAGAAGTACCTCTGGTCGCTCTACAACGCCCAGACCGGGTATGTGGAGTCGTTGGAC	245	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369723	1678	2e-24	273 - 332	100	60 / 60	plus	ABC29527
MLOC	MLOC_72420.1	1398	2e-24	1039 - 1098	100	60 / 60	minus	None
MLOC	MLOC_72420.2	1368	2e-24	1009 - 1068	100	60 / 60	minus	None
MLOC	MLOC_72420.4	1302	2e-24	1107 - 1166	100	60 / 60	minus	None
MLOC	MLOC_72420.5	1307	2e-24	1112 - 1171	100	60 / 60	minus	None
MLOC	MLOC_72420.7	1456	2e-24	1029 - 1088	100	60 / 60	minus	None
MLOC	MLOC_72420.8	1451	2e-24	1024 - 1083	100	60 / 60	minus	None
MLOC	MLOC_72420.3	1466	2e-24	1039 - 1098	100	60 / 60	minus	None
JLOC1	JLOC1_48162.6	1329	8e-25	226 - 285	100	60 / 60	plus
JLOC1	JLOC1_48162.5	1209	8e-25	141 - 200	100	60 / 60	plus
JLOC1	JLOC1_48162.4	1176	8e-25	125 - 184	100	60 / 60	plus
JLOC1	JLOC1_48162.3	1213	8e-25	115 - 174	100	60 / 60	plus
JLOC1	JLOC1_48162.2	1134	8e-25	88 - 147	100	60 / 60	plus
Harvest21	ABC29529	329	3e-25	246 - 305	100	60 / 60	plus
Harvest35	U35_29934	329	3e-25	246 - 305	100	60 / 60	plus

Contig Sequence (329 bp)

>U35_29934 329 Hv_44K_v2
CCATGCTCGGCGCCGTCCGCCGGATGCGTCTCCGCGTGCTCCGCCGTCACCTCCGCCTCC
GAGGCCGCAGGCGCCCTCGGCCCCGGAGAGGGGGCGGCGGCGCGGCGGGGAGCGGGGAGG
AGCGCGCGCGCGAGCCGGTGCTGCTCGTGTCCGGGATGGGCGGGTCGGTGCTGCACGCGC
GGCGGCGGTCCGACCCCAAGTTCGACCTCCGGGTCTGGGTGCGCATCCTCCTCGCCGACC
TCGAGTTCAAGAAGTACCTCTGGTCGCTCTACAACGCCCAGACCGGGTATGTGGAGTCGT
TGGACGACGATGTGGAGATTGCGGTGCCC

Homology of Contig U35_29934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None