barSeed - Barley Seed Development Database

Probe CUST_29084_PI390587928

Source Contig U35_29936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29084_PI390587928	Hv_44K_v2	GGAACATACATCATCTTCAATACCGCAGATACACTGTTCATTAGTGATCTCAACTCACAT	451	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359749	2454	2e-24	634 - 693	100	60 / 60	plus	ABC09515 ABC13981
MLOC	AK251570.1	2330	2e-24	650 - 709	100	60 / 60	plus	ABC09515 ABC13981
MLOC	MLOC_20047.2	1118	2e-24	618 - 677	100	60 / 60	minus	ABC09515
MLOC	MLOC_20047.1	1033	2e-24	533 - 592	100	60 / 60	minus	ABC09515
JLOC1	JLOC1_13905.1	1217	8e-25	442 - 501	100	60 / 60	plus
Harvest21	ABC29531	514	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_29936	514	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (514 bp)

>U35_29936 514 Hv_44K_v2
GTTTGATCTGTGTAAAACTGGTATGAGATGGCTGCGCGATGTTAGCCTTAATTTGGGGGG
CAACACTGACACCTCATTGTACAGGCATCTAGAACTAGAACGATACATCTACAAGATTAA
TTCTGCTTCTTAGACAGGGGCATAGATACATGCCATTCTTGTACCTCCACCTTCTCAAAC
GCCTTCATCACAGATGAATAACTGCGGACAAGTTAAAGTCAGCTGGCATAGTCTAGGTGG
CTCAATAAAGTAAAACGACACAAAACGCCTGTTGTTTATTTGACGGATCATGGAATTTCA
AGCTAACAGGAGAAACAGGGCCACAATGATTAACCTTGGCATCACTCCAGATGGACAAAG
CAAAATGCACATATCTAAAGCATTACCATTATGGTGGTAATTAGCTGTACGTGCAAGAGT
TGTATATGATGGATAAAAAGAATGCACAAGGGGAACATACATCATCTTCAATACCGCAGA
TACACTGTTCATTAGTGATCTCAACTCACATGAC

Homology of Contig U35_29936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None