barSeed - Barley Seed Development Database

Probe CUST_29082_PI390587928

Source Contig U35_29938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29082_PI390587928	Hv_44K_v2	GCTCTAATTTGTAGCAAGGAAAAGACCGTGAACAATAAGCTTAGGAAGTAATGTTGATTT	312	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.471	3.047	1.466	0.451	0.028	0.013
Raw	2675.690	5412.501	2148.877	1068.793	22.591	11.510

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65424.1	412	2e-24	11 - 70	100	60 / 60	minus	ABC11592 ABC11593 ABC11594
JLOC1	JLOC1_43054.1	437	8e-25	323 - 382	100	60 / 60	plus
Harvest21	ABC29533	427	3e-25	313 - 372	100	60 / 60	plus
Harvest35	U35_29938	427	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (427 bp)

>U35_29938 427 Hv_44K_v2
TAGAATAGAAGTAGGAACCAAGGAAATAGTAAACAAGTTTGTTATGGCTCCAATCAACTC
AAGGTTTTCGTGCTTGATGATGGCTCTTTTGCTGTTGTCAACCACTTGTTTGTCGAGTCA
AGTATCAGAGACAGAGAGGAGCATAGGCGTGAAAGCCAACGCATGCGCGGGCCGTGAACC
TTACCAGTACGATTGTACGCCTGGAGGCTGTGTTACTGCATGTAAAAAACTGGGCTGCGG
AACTGGGGTTTGCCATTCAAATGGTAGTTGCTATTGCAGCTAGATGAGGCTGCTCGATCC
GTCCTAGTTGTTGCTCTAATTTGTAGCAAGGAAAAGACCGTGAACAATAAGCTTAGGAAG
TAATGTTGATTTTTTTTCAATTCCTGGAATAATTTAAATAGAGATTATTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_29938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None