barSeed - Barley Seed Development Database

Probe CUST_29074_PI390587928

Source Contig U35_17968

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29074_PI390587928	Hv_44K_v2	TTTGTTAACAAGGGAGTGCGTGAATCAAAGTTAAGCGAATGATTACTGTGCCTATGTTGA	864	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.441	1.375	1.072	0.954	0.463	0.436
Raw	4649.640	6782.643	4751.723	6504.277	1128.881	1159.497

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252027.1	944	2e-24	881 - 940	100	60 / 60	plus	ABC08373
JLOC1	JLOC1_43809.1	1241	4e-23	1013 - 1072	98	59 / 60	plus
Harvest21	ABC08373	945	3e-25	865 - 924	100	60 / 60	plus	ABC08373
Harvest35	U35_17968	927	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_17968 927 Hv_44K_v2
CTGCCCGGAATTTATTGGAATCGCACACAATCTCAGAGGCCAAAACCCTCGCCTCCAACA
CCCCACCGCCGGCGATCTCCTCCCCCTCCTTCTCCGATGGATCTCTCAGCCGTCCACGCC
GCGCTTTCCGCCAAGTCCTACTCCGCCATGGCCACCCTCTGCGACGACCTCCTCCTCCAG
GTCGCGTCCCGGGGCGTCGCCACCGACGACTGGCCCTACGCCGTTCATCTCCTCGCCCAT
CTCTACCTCAACGACCTGAACAGCGCCAGGTTTCTCTGGAAGACGGTGCCACAGGAGGTG
AAGGACGCTCATCCGGAGCTGGGCGCCATCTGGAAGATTGGACAGTGCCTCTGGAACCGT
GACTATGCTGGGGTCTATACTTCCGCACAGGGGTTCGAGTGGGGCCCTGAAATCGCTGAT
TTTATGGCTGGCTTCCTAGAAAGCTACAGAAAGAGGATATTTGAGCTGTTGACTTCTGCG
TATACCACAATCAGCATTGCAGATGTGGCTCACTTCATGGGGATGAGCGAGGAGGATGCT
ACTAACTATGCTGTGCAAAATGGTTGGAGTCTGGATGCGGCAGCCAAGATGCTTACTGTC
AGAAAGCAAAAGCCCCAGACAAACCAGAAGCTTGATGCAAGCAAACTGCAGCGCTTGACC
GAATGCGTTTTCCACCTGGAGCATTGATGCCCTCCGTTCCTGCCCCTCACCCCTCTATGT
TTTATGCTTTTAAGGCACCTATTAATCGTACATGGTGGTAGCTTAACACTGTACGGCTAG
ATTGTGTTTTGGCTGGAAAGGAGATCGCTCTGTACTGAATATGCATCTTCTGGCTTAGCG
AGCTTGCTATTTCTGTCTCGTTCCTTTGTTAACAAGGGAGTGCGTGAATCAAAGTTAAGC
GAATGATTACTGTGCCTATGTTGAACC

Homology of Contig U35_17968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34930.1	197	7e-120	protein\|COP9 signalosome complex subunit 8, putative, expressed
Brachypodium v1_2	Bradi5g10090.1	197	4e-128
Arabidopsis v10	AT4G14110.1	197	1e-77	\| Symbols: COP9, CSN8, FUS7, EMB143 \| COP9 signalosome, subunit CSN8 \| chr4:8133049-8134867 REVERSE LENGTH=197