barSeed - Barley Seed Development Database

Probe CUST_29073_PI390587928

Source Contig U35_17969

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29073_PI390587928	Hv_44K_v2	TGTGTACCTTCCATGTTACAAGTCCTCTTATATGGAATAAAACATCTGGTTACTGCAATG	1215	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.019	0.018	0.813	3.647	2.379	2.065
Raw	3.104	5.519	297.515	1833.857	515.172	465.664

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74416.1	1287	3e-22	1232 - 1287	100	56 / 56	plus	ABC08026
JLOC1	JLOC1_49587.1	1360	8e-25	1234 - 1293	100	60 / 60	plus
Harvest21	ABC08026	1302	3e-25	1216 - 1275	100	60 / 60	plus	ABC08026
Harvest35	U35_17969	1302	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1302 bp)

>U35_17969 1302 Hv_44K_v2
GATCGAGGAACCCGGGCACAGTATGGCCAAGAGGAGGGCGAAGAAGGCAGCGGCGGCGGC
GGAGGGCGTCGTGGAGAAGGAAGGGGGCAAGGCGCCGCCGGTGAAGGATGCGCCGGCGAA
CGGGGTGGTGGTAATCGTGCCAGTCCACTGCGATGGCTGCGCCAGGAAGCTTCGCCGGTC
TCTGCTGCGCCTCGAGGGGGTTGATGAGGTGATCGTGGATCACTCGACCGACACCGTCGT
GGTAACTGGCCAGAGAGCGCTGGAGAACCCGATCATGGTGGTCGACGCGGTCAAGAGGAG
GACCGGGAAGAAGGCGCTGCTGCTGAGCCCATCGCCGGAGAAGCTGCCACCGCCGGTGAA
AAGCGAGGATACCAAGAAACAGGGTGCAGGGGCGCCAGACATGAAAAACGATGTAGCGGA
GCTCGACATGGAAATGGTTGTGGTGCTCAAGATCGAATTGCACTGTGAAGATTGCAGTGA
GGAGATGAAGAGGAGGATACTCAAGATAAAAGGAGTGGAGGAGGCCGTGCCGCACATTAA
ATCTTCACAGCTGATGGTGAAAGGGATGGTCGAGCCGGCAACCCTAGTAGGATTCATCCA
CAAGTGCACGGGGAGGAAAGCGGCCATTATCAGAGCCGAGCCACTGCATGAGGATACGCC
GGCGGCAGCCATGGATGAGGCTACGCCAGCGGATGCCGGCGCCAAGAACCAAGAATCATC
CAATATTCTGGAAAACAAAAATGAAGGGGTGGAAGAAGAGACCAAACAAGCGGTGAACGG
GGCAGGAGGAGAAGAGGCTGAAACGGAGAAGCCAACCAAAGGGGGTGGAGATGGGGTTGA
GAAGGAGACGGTTATAGAGGAAAACCAAACGAAGGATCACCTATTCAAACTGCATGTGCC
GGCGTCAGTTGCTGTGGTGGCGCCGGAGGCGGAGAAGATGATGGCCATGAACGGCCTCTG
CCAGTACAACTACCACCCAGCGGCCTACGCTTATGCGTACCCGCACTATGCTTACCAGCA
ATACCACCAATACCCATATGCTGGCAATCCTGCAACGTATGTGCCGTATCCGCAGCATTA
TCCGCCACAGACTTTCAGCGAACAGAGCCCAGAAGCATGCACCATCATGTGATGTAATGA
GCCGTGTGTACGTCGCTTCCATGGTACTATAAGCCATCGTACATGGAATAAAAAATCACG
TCATGTAGTGAACTGTGTGTACCTTCCATGTTACAAGTCCTCTTATATGGAATAAAACAT
CTGGTTACTGCAATGTATAAACAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g20340.1	419	3e-65	protein\|heavy metal-associated domain containing protein, expressed
Brachypodium v1_2	Bradi1g33630.1	392	3e-79
Arabidopsis v10	None