barSeed - Barley Seed Development Database

Probe CUST_29071_PI390587928

Source Contig U35_29941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29071_PI390587928	Hv_44K_v2	TTATCATATGATGGCGATTGTCTCGTCATCTGTTGATTTTCTCGCGCTCCTCACCTTCCT	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375379	2712	2e-24	25 - 84	100	60 / 60	plus	ABC12639 ABC25280
JLOC1	JLOC1_19944.1	516	6e-21	22 - 80	97	57 / 59	plus
Harvest21	ABC29539	374	3e-25	7 - 66	100	60 / 60	plus
Harvest35	U35_29941	374	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_29941 374 Hv_44K_v2
CTCATTTTATCATATGATGGCGATTGTCTCGTCATCTGTTGATTTTCTCGCGCTCCTCAC
CTTCCTCATCTGCCTCCTCCATCATTGCAGCGCAGGCTATGACGTTGAGTCGGTCGTCGG
GTCGGGGAACCTGTTATCGGCCAGTCTGATACTTGTAAACGGGACAACAACGCTCGGGCC
TGATGTCAAGAGGCTCGACCTAACTGCAAGCCTGGAGACAGATAACCGGCTCCACGTGCG
CATTACCGACGCCGACCATACACGATGGGAGGTCCCCAAAGACATCATGCCGCGCTCAAC
GTCGGTGTCGAAGGACGCTTTGTTCCAATCGCTAGGCATGGACAATGCCACCTTGCCGAG
CAGCGCCACCATCT

Homology of Contig U35_29941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None