- Probe CUST_29069_PI390587928
- Source Contig U35_29943
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29069_PI390587928 | Hv_44K_v2 | ACTACAACAACGTGTCCGAGTACGACGCGCACAACCTCTTCGGCCTCTACGAGGCACGCG | 240 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.268 | 2.701 | 3.815 | 1.796 | 0.154 | 0.137 |
| Raw | 59.686 | 196.588 | 234.730 | 173.831 | 3.746 | 3.248 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375379 | 2712 | 2e-24 | 1446 - 1505 | 100 | 60 / 60 | plus | ABC12639 ABC25280 |
| MLOC | MLOC_66202.1 | 2422 | 2e-24 | 1067 - 1126 | 100 | 60 / 60 | plus | ABC12639 ABC25280 |
| JLOC1 | JLOC1_43605.1 | 2422 | 8e-25 | 1067 - 1126 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29541 | 363 | 3e-25 | 241 - 300 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29943 | 363 | 3e-25 | 241 - 300 | 100 | 60 / 60 | plus |
Contig Sequence (363 bp)
>U35_29943 363 Hv_44K_v2 GGCCAGGCGAGGTCTACTTCCCGGACTTCATCAACCCACACGCCGCCGAGTACTGGGCGC ACAAGATCTCCGAGTTCCGGCGGACCATCCCCGTTGACGGGCTGTGGTGCGACATGAACG AGCCCTCCAACTTCGGGGCCTGGCAGCCGCTCAACGCGCTGGACGACCCGCCATACCACA TCAACAACTCCGGCACGCATCGTCCCCTCAACAACCAAACCGTGCCGGTCTCCACGGTGC ACTACAACAACGTGTCCGAGTACGACGCGCACAACCTCTTCGGCCTCTACGAGGCACGCG CCACGCATGCCGCACTGCTCAAGGACACGGCGCGACGCCCCTTCGTGCTCAGCCGCTCCA CCT
Homology of Contig U35_29943 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g46284.2 | 886 | 7e-58 | protein|glycosyl hydrolase, family 31, putative, expressed |
| Brachypodium v1_2 | Bradi2g19280.1 | 842 | 4e-56 | |
| Arabidopsis v10 | None |