- Probe CUST_29068_PI390587928
- Source Contig U35_29944
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29068_PI390587928 | Hv_44K_v2 | ATTCTTGCTTCACTACCTGCAAGGGTTGTTCTCAAGTTTCGTGCAGTGTGTAGATTCTGG | 484 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.124 | 0.800 | 1.336 | 1.686 | 0.684 | 0.488 |
| Raw | 15.099 | 16.537 | 24.677 | 48.266 | 5.355 | 4.713 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_43983.1 | 1595 | 2e-24 | 1443 - 1502 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_43983.2 | 1994 | 2e-24 | 1329 - 1388 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_28465.1 | 3304 | 8e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29543 | 553 | 3e-25 | 485 - 544 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29944 | 553 | 3e-25 | 485 - 544 | 100 | 60 / 60 | plus |
Contig Sequence (553 bp)
>U35_29944 553 Hv_44K_v2 TCCGATTTTGCCTCCAGAGCCCCGACTCACGGCCACCGTCGTGAACAGCGCCGGCGCTCC CCCCGCGTCGGCATTTCCTAGGGGCGGCGACGGCGCGACCCGACGCCGGCGGCACCTACT CCGCGCTTCTCCGCCGCCGCTCAACCAATTCCTCTCTAGATTAGGGTTTTTTCCTAACGA AATCTGGCAATTACACCGCCGCTCTACATTTACCAATTCATTCATCGTACCACCGAGCAA AGCCCGATCGCGACCCGCAGCTCCTCTGCCTCCTCCGCCTCAGTGGTGTTCCGCCGTCTG GCTCTGTCTCGTCCCCCCGAGGATCTCCATTTCTCGCGTTCCCAGTCCTCCACCTGATCA TTCCCTACGTAGATCCGCCCGGCCTAAAGATTTCGTTTCTTCGTGTGCCATGGAAGACAA CAACGATGAGCAAAATGAAGCAGTACAAGCCCAAGTATCTCTTCCTCAGGATATCCAACA CACTATTCTTGCTTCACTACCTGCAAGGGTTGTTCTCAAGTTTCGTGCAGTGTGTAGATT CTGGCGTGACTGC
Homology of Contig U35_29944 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |