- Probe CUST_29064_PI390587928
- Source Contig U35_29948
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29064_PI390587928 | Hv_44K_v2 | CTGTGTTAATTAGTGCTGAATGCTTATTTCTTGCCACATAATTCATCGGTTTTCACATGT | 342 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.684 | 3.462 | 1.301 | 1.115 | 0.173 | 0.049 |
| Raw | 958.861 | 1870.567 | 642.084 | 877.473 | 46.470 | 14.240 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_46873.1 | 418 | 7e-23 | 333 - 392 | 98 | 59 / 60 | plus | None |
| Harvest21 | ABC29549 | 432 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29948 | 432 | 3e-25 | 343 - 402 | 100 | 60 / 60 | plus |
Contig Sequence (432 bp)
>U35_29948 432 Hv_44K_v2 CTCATCTTCTCAACAATCAGATTCGAGCACTTGTCGGTGGCAATATTCGAGAGAAATAGG TTTGAGATGGAAAACGTTCAGGATGAAAGCATCGGCTCATCATCTCCTAGTTCATGTGTA TCATCTGACAACAGTCCGGTTGAGATGATGTACGGGGGGTGTCCGCGATGCTATCTACAT TGTCTCGTGCATAGGGACGAGTTCCCCATGTGCATCAAGTGCAAGCAGCCAACGCTCCTC AAGTTGCAAACTATGCTCGACAACATGGAGCGCCCTAAGCGTCAGTAATCAAGTGTAGGG CTATGATGGCATACTTTGTTAACATGCCTTACCCTTGTGTATCTGTGTTAATTAGTGCTG AATGCTTATTTCTTGCCACATAATTCATCGGTTTTCACATGTAAACATATTAATTAATGA GATTATTGTAAA
Homology of Contig U35_29948 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |