barSeed - Barley Seed Development Database

Probe CUST_29059_PI390587928

Source Contig U35_17973

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29059_PI390587928	Hv_44K_v2	GGAATATCGAATGAATAGTATGATGCTTCATTGTTGCACTCCACAAGATAATGTTATCGA	957	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.395	0.575	0.852	1.832	1.401	2.030
Raw	1181.645	2714.709	3532.013	12191.147	3210.783	5028.353

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_17973	1029	3e-25	958 - 1017	100	60 / 60	plus

Contig Sequence (1029 bp)

>U35_17973 1029 Hv_44K_v2
TTTTCGTCGGATCGTAGTATGGCAGCTTGCTCAGCCCTCTCTGCGGCGACCCTTCGCTCG
GCCGCGGCGCCGGTCAGCAGACGGCGAGCTACAGCGTCGCCGCGGCTTCCCGGCAAGCGC
GTCTCCGGCGTTGTGCGGTGTAGCGCTGCTCCAGGCGGACACGGGATCTCGGGGAAGATG
GCCGAGCTGTGGCAGGCAGCGAGGAGCGCGCCTCCGGGGACGGTGCTCGCCGCCGTGGCT
GCCGCAGCGGTGGTCTACAAGGTGGCGTCCGGCCTCCTCGCCCCGCCACCTCCGCCGCCG
CGACGACGGCAGGAGGTGGCTGATGAGGCGCTGCCACCAGCTCTGGAGCCAGTGCAGGTG
GGGGAGATCACGGCGGATGAGCTGCGGCAGTACGACGGGTCTGACCCCGAGAAGCCGCTT
CTCATGGCCATCAAGGGGCAGATCTACGACGTCTCCCAGAGCAGACTGTTCTATGGGCCT
GGTGGACCATATGCATTGTTTGCTGGTAAAGATGCCAGTAGGGCATTGGCGAAGATGTCC
TTTGAGCCACAAGATCTGACAGGTGATGTATCTGGCCTTGGTTCATTTGAGCTTAGTGCC
TTGCAGGACTGGGAGTACAAGTTCACCAGCAAGTATGTGAAAGTAGGAAGCATCAAAGGA
ACAGGACCCATAGAAGAGGGTAATGTTAGCACTACCTCTGAAATAGAGGAGGAAGCTGCT
GCGGTGAAACTGAATGGAGAGAAAGCACCATGAGACACTACTGGAAATATAATTGACTCT
GAATTTCGACGAGAAAGAAAGAAATGGAGGTCACTTCTGATCAAGGATCCAAAGAGAGTC
AGAAGCTGGATGCCTCCTAGCTGCTACAGTGCTGTTACCTACATGCATCTGGAGTGTAAT
TCACAGATATACTGTATAGGTTTGTCTGACCAGAGGTTGAAGTGTAATGTTAAGCATGGA
ATATCGAATGAATAGTATGATGCTTCATTGTTGCACTCCACAAGATAATGTTATCGATTT
TCCTTTGTC

Homology of Contig U35_17973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35850.1	266	2e-75	protein\|cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g30170.1	283	2e-93
Arabidopsis v10	AT5G52240.1	220	4e-58	\| Symbols: MSBP1, ATMP1, AtMAPR5 \| membrane steroid binding protein 1 \| chr5:21213121-21214557 FORWARD LENGTH=220