- Probe CUST_29050_PI390587928
- Source Contig U35_29952
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29050_PI390587928 | Hv_44K_v2 | GGCTATGGCGAGAAAGTAGCTTAATCATTGCAGTCCCTATTGTATCATTTAATGCTTTAT | 275 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 25.707 | 6.319 | 1.590 | 0.365 | 0.593 | 0.528 |
Raw | 292.171 | 111.826 | 25.283 | 6.566 | 2.847 | 2.891 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC29553 | 425 | 3e-25 | 276 - 335 | 100 | 60 / 60 | plus | ABC29553 |
Harvest35 | U35_29952 | 425 | 3e-25 | 276 - 335 | 100 | 60 / 60 | plus |
Contig Sequence (425 bp)
>U35_29952 425 Hv_44K_v2 GTTTCTGTTGAGATAGACAAAGCTAGTAAGAGGATTTTCAGGGATTGGTGGGATCAGACT CAAACAGGCACACTGATTGAGATTGATGACGTGAAATCTCTTACTAATGATGAAGTTGCA CAATTCGTTACTAGACTTGGCGGCTTCGACTTGGTGATTGGGGGCAGCCCATGTAACAAT CTTGCCGGGTGCAACCGATACACTCGTAATGGCTTGAATGGCGAGAAATCTGTTTTGTTC TACGAGTACGTCCGAATCTTGAATGTTGTCAAGTCGGCTATGGCGAGAAAGTAGCTTAAT CATTGCAGTCCCTATTGTATCATTTAATGCTTTATATCTAGGAACCAAAACTTATTTGTG TTTAAACATAGAGTTGATTTGGAAGATTTTAATTTCAGAGAAAGATTATATTTAAAAAAA AAAAA
Homology of Contig U35_29952 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |