- Probe CUST_2903_PI390587928
- Source Contig U35_28309
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2903_PI390587928 | Hv_44K_v2 | TTATACGCCAAGCCAATATGAGCAGAAGGAAGAGAAGGTCTAGCCTCTTTGATTTGGTGC | 536 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.251 | 0.581 | 1.298 | 2.218 | 1.116 | 1.318 |
| Raw | 10.650 | 37.090 | 76.022 | 208.055 | 36.605 | 47.286 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366515 | 1257 | 2e-24 | 558 - 617 | 100 | 60 / 60 | plus | ABC07628 |
| MLOC | MLOC_10528.1 | 1048 | 2e-24 | 235 - 294 | 100 | 60 / 60 | plus | ABC07628 |
| JLOC1 | JLOC1_6892.1 | 1323 | 8e-25 | 238 - 297 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27106 | 618 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07628 | 1355 | 3e-25 | 751 - 810 | 100 | 60 / 60 | minus | ABC07628 |
| Harvest35 | U35_36407 | 487 | 3e-25 | 154 - 213 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28309 | 618 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3006 | 1979 | 3e-25 | 557 - 616 | 100 | 60 / 60 | plus |
Contig Sequence (618 bp)
>U35_28309 618 Hv_44K_v2 GCTCCTCTCCTCTCCTCTCCGCTGCTCTCACCACCACCACCACCACACCGCCACCACACT TCGCTTCTCCTCCCAGCCCACCTCTCCTCTCCCCTTCCGGCGCGCTACACCGGCGGGTGC GCTGGCGGCTCCGGGGATGACGAGGCGGTGCTCGCACTGCAGCTACAACGGCCACAACTC GCGGACGTGCCCCAACCGCGGGGTCAAGATCTTCGGGGTGCGCCTCACCGATGGATCCAT CCGCAAGAGCGCCAGCATGGGGAACCTCTCCCTGCTCGGAGGATCCACCAGCGGCGTCGT GGCCGACGTCAGCGGGGGACGCGCCGCCGCGGAGGGCTACGCCTCCGACGACTTCGTGCA GGGATCATCATCCGCCAACCGCGAGCGCAAGAAAGGGGTTCCTTGGACTGAAGAAGAACA CCGGAGGTTTTTGCTTGGATTGCAAAAACTTGGAAAAGGTGATTGTCGAGGAATCTCTCG TAATTTTGTGGTCTCAAGAACACCTACTCAAGTAGCAAGTCATGCTCAGAAATATTTTAT ACGCCAAGCCAATATGAGCAGAAGGAAGAGAAGGTCTAGCCTCTTTGATTTGGTGCCTGA CGAGTCGGACCTGCCACC
Homology of Contig U35_28309 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g41200.1 | 319 | 4e-80 | protein|MYB family transcription factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g05590.1 | 369 | 1e-54 | |
| Arabidopsis v10 | AT5G47390.1 | 365 | 3e-69 | myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365 |