barSeed - Barley Seed Development Database

Probe CUST_29030_PI390587928

Source Contig U35_29962

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29030_PI390587928	Hv_44K_v2	TATCTGCCGTCAAAAGCTAATGGAATGAGCTCTGGAAAAGGTGTGTTCGCTATTTCGCTC	384	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.001	2.278	1.554	0.810	0.386	0.344
Raw	35.836	67.244	36.540	32.417	3.182	3.585

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57126.1	966	2e-24	453 - 512	100	60 / 60	plus	ABC18155
JLOC1	JLOC1_36976.1	936	8e-25	445 - 504	100	60 / 60	plus
Harvest21	ABC29567	509	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_29962	509	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (509 bp)

>U35_29962 509 Hv_44K_v2
GTTTGTGTACGTGTGTTTGTTGTGGACGTGAGCCCTGAGGCCATGGAAGGAGGAGCCATC
TCGGCGGATGCGGGCAAGGCGACCTATGGCGCCGCGGAAATGCACAAGAGTCCACTTCAT
CCACAGCCACAGCCCATCGTCGGCGCCCGCCTGGCTGATGCTGATGAAGAGCCACGTGCG
ACTGAAATAGTTCCTCAGATCATCACAGTCAAAGGTGGAGAGGATGTAGCAATGGAAGTC
ATGTCGTATGGTGGGAATGGTTGGGCAGTTTTTATCATGTCTGCCGATGGCACCGTATGC
AATGTGACACTGCATCAACCAGCTTCTCCGCATGAAACAGTTATTCATGAGGGTTTTTTC
GACATCGTCTCTTTGTCCGGCTCATATCTGCCGTCAAAAGCTAATGGAATGAGCTCTGGA
AAAGGTGTGTTCGCTATTTCGCTCGTCGGTGCTGATGGCCGCATCTTCGGTGGTGGGTTA
GCAGGACCTCTGATTGCAGCATCACCTGT

Homology of Contig U35_29962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None