barSeed - Barley Seed Development Database

Probe CUST_2902_PI390587928

Source Contig U35_30620

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2902_PI390587928	Hv_44K_v2	TGAGTTGTGTGAATCTGTATCTGTATTGTGTCTTGCCTCCGAACAGTTGATCGATTTTTT	254	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361833	474	2e-24	391 - 450	100	60 / 60	plus	ABC13170 ABC30617
Harvest21	ABC30617	359	3e-25	255 - 314	100	60 / 60	plus	ABC30617
Harvest35	U35_30620	359	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (359 bp)

>U35_30620 359 Hv_44K_v2
TCTTCCGCAGCAAGCGCTCCTCCTCCTCCTCCGCGTCCGCCGCATCCGCCGCCGCCTCCG
CCGCCCCCTCCTCCTCCTCCTCCTTCTCCAAGCAGACGAACAAGGGGCTCTTCTGACGGC
CCGCGCGCTCGCATTCCGTTTGGCGCCGCTGTTGTAGCTGGTAGCGCTAGCTCCATTCTA
CAGGGAAAGAGAGGGAATCACATCCGCATCCGCATCCGCGGGTCTGTCTCTGATGCAGTA
CAACTAGTATAAATTGAGTTGTGTGAATCTGTATCTGTATTGTGTCTTGCCTCCGAACAG
TTGATCGATTTTTTTGGTGATGAAATGAAATGAAAGGGAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_30620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None