- Probe CUST_29023_PI390587928
- Source Contig U35_29969
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29023_PI390587928 | Hv_44K_v2 | CTTAGGAGGGTGAAAGTCAATCATCTATGCCACTACCAATCAATAGATTTAATAAACTTC | 309 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.407 | 3.456 | 2.285 | 0.979 | 0.080 | 0.014 |
| Raw | 1433.425 | 5924.884 | 3123.503 | 2264.985 | 65.853 | 9.526 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_13282.1 | 565 | 8e-25 | 315 - 374 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29574 | 435 | 3e-25 | 310 - 369 | 100 | 60 / 60 | plus | ABC29574 |
| Harvest35 | U35_29969 | 435 | 3e-25 | 310 - 369 | 100 | 60 / 60 | plus |
Contig Sequence (435 bp)
>U35_29969 435 Hv_44K_v2 GTAGAACACTAGCAAGATGGCGCTTGTGAAGAACACCAGCGTGTTGTGTTGGATAGCTAT TATTCTCATGTCCATCACTTCCTTGTCCTGCCATGTTGCTGCGAGGAGGACACATACAAT GGACTTTGGACCTATTCTTGGGTGTGTAAAGATGGAAAAAGCTTGTTCGGTTGTTGGGTG CACCAAGATATGTTCCGACCTTGGTTGGAATACCCACAGATGCTATTGTGCCGATGCTGG CAGTTGCTGCCACTATGCGGATGGAAAACCATTAAATTGATAGTAGAATATATTGTCATG TGGTATTTTCTTAGGAGGGTGAAAGTCAATCATCTATGCCACTACCAATCAATAGATTTA ATAAACTTCTAAACAATGTAGTTGGATTATATTTTTGAAGTGACTATTTCGGTGATATGT TCAAAAAAAAAAAAA
Homology of Contig U35_29969 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |