- Probe CUST_29020_PI390587928
- Source Contig U35_17992
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29020_PI390587928 | Hv_44K_v2 | ACGAGAACTGGAAGCTAGGGATGTGAATCCATTCTTCCACCCGATTACTGATTCTGGAAA | 594 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.353 | 0.582 | 0.833 | 2.135 | 1.453 | 2.177 |
| Raw | 199.919 | 554.591 | 659.822 | 2762.639 | 634.838 | 1035.085 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76686.4 | 898 | 7e-23 | 579 - 639 | 98 | 60 / 61 | plus | ABC07994 |
| MLOC | MLOC_76686.1 | 3520 | 7e-23 | 3102 - 3162 | 98 | 60 / 61 | plus | ABC07994 |
| MLOC | MLOC_76686.2 | 1121 | 7e-23 | 809 - 869 | 98 | 60 / 61 | plus | ABC07994 ABC11977 |
| MLOC | MLOC_76686.3 | 1037 | 7e-23 | 725 - 785 | 98 | 60 / 61 | plus | ABC07994 ABC11977 |
| JLOC1 | JLOC1_51141.2 | 1096 | 4e-23 | 759 - 819 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_51141.1 | 1088 | 4e-23 | 751 - 811 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC07994 | 961 | 1e-23 | 595 - 655 | 98 | 60 / 61 | plus | ABC07994 |
| Harvest21 | ABC07993 | 1040 | 1e-23 | 679 - 739 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_17992 | 660 | 3e-25 | 595 - 654 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17991 | 1045 | 1e-23 | 679 - 739 | 98 | 60 / 61 | plus |
Contig Sequence (660 bp)
>U35_17992 660 Hv_44K_v2 GGAAAGGTTCGGGTGAAGAAACCAGAGGAAGGAACGCAAGAAAAGATTCGCAGCTTCGGG AGAGCGGATTGCTGGGCAAATGGGGTCCGGATCTTTCCTCAAGGTGCTCGTCAGCAACCT GGATGTTCTCGCCGGGCCCATAGTTTCACTCGCTTATCCTCTGTATGCGTCTGTTCGAGC AATAGAAACAAAATCTCCTATAGATGATCAGCAATGGCTCACTTACTGGGTGTTGTACTC GTTTATCACTCTGTTCGAGCTCACCTTTGCTGCAGTAATTGAATGGCTCCCTTTTTGGTC TTACGGAAAACTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTTAACGGTGCAGCGCA TGTTTATGAGCATTTTGTGCGGCCAATGATTGTGAACCAGCAAGTTGTAAACATCTGGTA TATTCCAAAAAAGGAAAATTCAGATAAACCCGACGATGTAATTTCAGCTGCACAGAAATA CATTGAACAAAATGGATCTAAAGCATTTGAGACTCTCGTTAACAAGTTTAAGACTACAAA CGCGAGGCGCTCTATTTTGGAGGAGGTAGAGGTGGAAAGGAGAGCGAGGGCCGAACGAGA ACTGGAAGCTAGGGATGTGAATCCATTCTTCCACCCGATTACTGATTCTGGAAAGCTCTT
Homology of Contig U35_17992 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g51290.1 | 193 | 4e-103 | protein|HVA22, putative, expressed |
| Brachypodium v1_2 | Bradi3g59310.2 | 191 | 2e-107 | |
| Arabidopsis v10 | AT1G74520.1 | 177 | 6e-72 | | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177 |