barSeed - Barley Seed Development Database

Probe CUST_29019_PI390587928

Source Contig U35_14000

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29019_PI390587928	Hv_44K_v2	TAGTAGTTGTAATGCTTGATGTGGACTGCTGAATCCGTGGCAATGTTTGGTTGACTCGTC	596	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.549	1.622	1.136	0.929	0.571	0.512
Raw	20687.500	33986.750	20608.267	26630.523	5661.497	5571.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37966.1	722	7e-23	521 - 580	98	59 / 60	minus	ABC01157
JLOC1	JLOC1_24637.1	551	4e-23	350 - 409	98	59 / 60	minus
Harvest21	ABC01157	686	3e-25	597 - 656	100	60 / 60	plus	ABC01157
Harvest35	U35_14000	686	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_14000 686 Hv_44K_v2
ACCTACCTGCAGCGAAGCCACTCACCCACCTAACCCTTCTTTCCCTCCCGAAGCAGCGAT
GGCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCTGTGGAGGAGGAGGCCGCGGC
GGAGAAGGCCGAGAAGGCCCCGGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGC
GGGCAAGACCGCCTCCAAGGAGGGCGGCGAGAAGAAGGGCAAGAAGAAGAGCAAGAAGAG
CGTGGAGACCTATAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACATCGG
CATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCT
CGCCGGGGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGA
GATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCATGCCGTCTCCGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCCTCTTAGATTGCGTCTCCTGTATCTAGTAG
CAGTTCACTGTTGGTTTAGTGGTTGACTGTCGACTCCGTTTATCTGAAAGTAGTAGTAGT
AGTTGTAATGCTTGATGTGGACTGCTGAATCCGTGGCAATGTTTGGTTGACTCGTCGCTG
CATGAATTGAGGGCGTTTGGTTTCCA

Homology of Contig U35_14000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	1e-53	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	1e-55
Arabidopsis v10	AT5G22880.1	145	4e-52	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145