barSeed - Barley Seed Development Database

Probe CUST_29018_PI390587928

Source Contig U35_17993

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29018_PI390587928	Hv_44K_v2	TAAAAAGTGTAGGCGTGGGAAATGCTTAACAGAGCAGGAGTCTTGGTCTTGCACTCAAAA	1665	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10811.1	2502	7e-23	53 - 109	100	57 / 57	minus	ABC07135 ABC11168
JLOC1	JLOC1_7100.1	2629	4e-23	2356 - 2412	100	57 / 57	plus
Harvest21	ABC11168	1738	3e-25	1666 - 1725	100	60 / 60	plus	ABC11168
Harvest35	U35_17993	1738	3e-25	1666 - 1725	100	60 / 60	plus

Contig Sequence (1738 bp)

>U35_17993 1738 Hv_44K_v2
GACGGGCCGGGACCTGGACGACAAGTACGTGCTGGGCGGCGAGCTTGGCCGCGGCGAGTT
CGGCGTCACCTACCTCTGCACCGAGGCCGCCACGGGCGCGCGGATGGCCTGCAAGTCCAT
CTCCAAGCGCAAGCTGCGCACCCCCGTCGACGTCGAGGACGTGCGCCGCGAGGTGGAGAT
CATGCGCCACATGCCGCCGCACCCCAACATCGTCAGCCTCAGCGCCGCCTACGAGGACGA
GGACGCCGTGCACCTCCTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGT
CGCCCGGGGACACTACACCGAGCGCGCCGCGGCCGCCGTCACCCGCACCATCGTCGAGGT
CGTCCAGATGTGCCACAGGAATGGTGTCATCCATCGGGACCTCAAACCGGAGAACTTCTT
ATATGCGAACAAGAAGGAGAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTGTCTGTGTT
CTTCAGGCCTGGTGAACGGTTTAGCGAAATCGTAGGCAGTCCATACTACATGGCCCCAGA
GGTTCTGAAGCGCAATTATGGCCCTGAAATCGATGTCTGGAGTGCAGGAGTTATACTTTA
CATACTTCTTTGTGGTGTGCCACCATTTTGGGCAGAAACTGAACAGGGAGTTGCACAGGC
AATTATACGCTCTGTTGTGGATTTCAAAAGAGACCCATGGCCCAGAGTATCCGAGCCTGC
TAAAGATCTTGTCAGGCGGATGCTCGATCCAAACCCAATCACGCGGCTTACTGCAGCACA
AGTACTTGAACATCCATGGTTACACGATTCGAAAAAGAATCCTGACATTCAACTTGGCGA
TACTGTCCGAGCAAGACTGCAGCAATTTTCTGCAATGAACAAATTAAAGAAGAAAGCCTT
GAGGGTGATTGCCGAGCATTTGTCTTTAGAAGAAGTAGCTGACATAAAGAAAATGTTTGA
TAACATGGACATAAACAATAAGGGCCAACTAACCTTTGATGAGTTCAAGGCTGGCCTTCG
TAAACTTGGAAACAAAATGCATGATTCAGATCTTCAGATGTTGATGGATGCTGCTGACGT
CGATAAAAACGGCACTCTAGATTATGGAGAATTTGTTGCGGTGTCTATCCATGTCAGAAA
AATAGGCAATGATGAACACATCCAAAAGGCTTTCTCATACTTTGACCAAGACAAGAGTGG
GTACATAGAGATTGAAGAGCTTAGAGTGGCACTGACCGATGAGGTGGATGGGCCTTGCGA
TGAAGACATTATCAATGGCATCATTCATGATGTAGATACAGACAAGGACGGGAAGATAAG
CTACGACGAGTTTGCGGCGATGATGAAGGCGGGGACGGACTGGAGGAAGGCGTCCCGGCA
GTACTCGAGGCAGAGGTTCAGCAACCTCAGCCTGAAGCTCCACAAGGATGGGTCCATCAG
CGACGACCAGAAGTAGACGGAGCAGAGGTTTATATTGACCATCGAGTGTCGTGTTGTTTC
GCTGTGCCGGGGTTTTGTGGTCAGGTTTTCATTTTCCACCAGCTTATTCCTTCCTTGGGT
TCTTTATTTCTTTCACACGGTAAATGCAGCTACCACTCGATTCTTGGCGTTTGTTGCTTG
TAAAGAAGATCGTAGCTTGTAAGTAAAATCGTTTGCAGTGTAATGTAAAAAGTGTAGGCG
TGGGAAATGCTTAACAGAGCAGGAGTCTTGGTCTTGCACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g59390.1	539	protein\|CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g04440.1	534
Arabidopsis v10	AT5G12480.1	535	\| Symbols: CPK7 \| calmodulin-domain protein kinase 7 \| chr5:4047817-4050035 REVERSE LENGTH=535