barSeed - Barley Seed Development Database

Probe CUST_29015_PI390587928

Source Contig U35_14002

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29015_PI390587928	Hv_44K_v2	ATTCAAGTATGTCTTGGTTCAATGAACTGAAGACGACATGTTTGCCTCTTTGATCAAGAA	601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10206.2	3876	7e-23	917 - 976	98	59 / 60	minus	ABC01146
MLOC	MLOC_10206.1	3698	7e-23	919 - 978	98	59 / 60	minus	ABC01146
Harvest21	ABC01146	967	3e-25	602 - 661	100	60 / 60	plus	ABC01146
Harvest35	U35_14002	967	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (967 bp)

>U35_14002 967 Hv_44K_v2
GCTTTACTTTAAGATGGTTGCAGGATTAAATGAATATTTTCTTTGTATTTAAGCACAGTT
TGCCAATTATGTTTATTCTAATGAACAAAGTTAATGACAATGAGATATTTTGGAAAAGTC
TCTGACATGCTTCTGTGGCATTGGTTTCACTTAAGATTCATGTTTCTGTATAATCATGTA
GCAGTGTTGTCTTGAAGTCTGTTCTAGCACTCTCTGTCACATTAACATTCTATGGTTGAT
CCCTGGACCATTCTATTGGTAACCTCCCCCATTATGCAAAAGTATTCACATGCTTTCTGA
TTAGATGCAGAAAAAATTGTTTATCGACCATGGAAGAATCATCATCAAACTGGGCCATGA
AGATCTTCACCTCAAGTAAAGGTGCAAACAAAACTATTATATTTATGTACTCTTTAGTTG
GGGTCAGTTATTGGTGGCTGGTGGCTGGGGGAGGGGCATGGAGGCGATACTCCCATTTCG
TAGATTTCTCAAGTTGCATGTTGTTGGCAGCGCCGTGCAGAGTCGTGTCATCTAGCAATA
ATTGAAGATATTTTCTACAATATTCTAGTGAGAAATAATTTACCTTTTTTTTTGGTCACA
AATTCAAGTATGTCTTGGTTCAATGAACTGAAGACGACATGTTTGCCTCTTTGATCAAGA
ATATAATTATTTCAGTCTTTTTTGGGAGCAAAACTCGCCAAGCACGCTGTCTCCGAGGGC
ACCAAGGCAGTCACCAAGTTCACCTCCTCCTAGACTGCCGATGCGTGTGTTTCCTGAAGT
AACAGATGCCGTTGGTTGCTGTTATCTCCTCTTAGTGGTTGCTGACTCTGGTTATCTATC
TGCAAGTAGAAGTAGTCGTAGTTGTCTGAATGATGTATGGTTGCCAACACTTTGTTGGCT
CGTTTGTTGTATGAGCTGATTTTGCTAAACTATCTGAATGTTAATGTCGCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_14002 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None