barSeed - Barley Seed Development Database

Probe CUST_29011_PI390587928

Source Contig U35_14004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29011_PI390587928	Hv_44K_v2	TGCCCAATGCTTCGTTCGCTGTAAGAACTGAATTATGAATGGTGCCGCTTTTGCAAAAAA	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27244.1	835	3e-22	292 - 347	100	56 / 56	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
JLOC1	JLOC1_18416.1	578	1e-22	292 - 347	100	56 / 56	plus
Harvest21	ABC01162	711	3e-25	641 - 700	100	60 / 60	plus	ABC01162
Harvest35	U35_14004	711	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_14004 711 Hv_44K_v2
GCCCCACCCACCTTCCGTCTCCCGTGCGCACAACTCTCCACCGCAGCCCCCAATCCCCAC
CCGTCTTCCCGGAGCAGCGATGGCCCCCAAGGCAGAGAAGAAGCCGGCGGCGAAGAAGCC
CGCGGAGGAGGAGCCGGCGACGGAGAAGGCCGAGAAGGCCCCGGCCGGGAAGAAGCCCAA
GGCCGAGAAGCGGCTACCGGCGGGCAAGAAGACCGCCTCCAAGGAGGGCGGCGGCGAGAA
GAGGGGCCGGAAGAAGGGCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGT
GCTGAAGCAGGTCCACCCTGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTC
CTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAA
CAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACATCCGTTCGCCTCGTCCTCCCCGG
GGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTC
TTAGATTCCATTGCATGTATCATGTGGTAAACGTGGTTGTTCAGTCTGGTCATCGCCAAG
TAGAAGTAGTGCTGGTGCTGGATGGGAGTTGCTGAATGCTTGCCCAATGCTTCGTTCGCT
GTAAGAACTGAATTATGAATGGTGCCGCTTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49860.1	153	8e-56	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	3e-58
Arabidopsis v10	AT5G22880.1	145	8e-54	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145