barSeed - Barley Seed Development Database

Probe CUST_29010_PI390587928

Source Contig U35_17997

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29010_PI390587928	Hv_44K_v2	AGCCATCCATTTGCTCCGTGATCTGTGTAGAGAAACAAACTATTTTATCCTTGCAAAAAA	1758	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.971	1.636	1.374	0.915	0.347	0.347
Raw	112.356	150.205	109.664	110.048	14.789	15.911

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09039	1831	3e-25	1759 - 1818	100	60 / 60	plus	ABC09039
Harvest35	U35_17997	1831	3e-25	1759 - 1818	100	60 / 60	plus

Contig Sequence (1831 bp)

>U35_17997 1831 Hv_44K_v2
GTCAAGGCAAAGCAACGGCGGCTCCTCCCTTCCCCTATCTTCTCCTAACTCGTGTGCTTC
CTCTTTCTTAATCCCAATCTCCTGTATCTGAGCTCAGTTTACCTATAATGGAGTGATTCG
CGTGTTGGATCCTAACAGCGACTTACGGGGGAGTTGGTACCTGCTGCAATCTAATTCCCT
CCCCGTACCGTTTACCCGTCGTCACCTCCACCTCCGCACACACGCACTCTCTCACCGCAT
CTCCGGCGACCACCGCCCACCTTCGGCTACCGCTACTCCCGCCCTCTCCTGTGATGGCGC
CGCGCGGCGGTGGGCAGACCTACGGCTTCCCCATCTACTGCGCCTCCTGGCTCCCACTCG
CACACATCATCAAGCCCTCCCCATCTGCCGTAGACGTCGCGGATGCGAATGCGTCCCCGT
CCTTCCCACCTCCGCCCCCCATGGTGGTCCTTGGTGGAGGCGGAGGCGAGGGCCGGAGCG
GCGTGCCCAACGCGCTGGTCGTCGCCGCCCTCGACCCCGCCGCTGCAGGGGCGCCTCCAG
CGCTCTCCCCCGAACCGGTGTTTAGGCTGGGGACAGAGGAGGAGGTACCATACAGGATGG
CCGTACACCCTCGCGGCGATGGCGTCCTCTGCTCCTTCCCCAACGGCTGCAGGTTGGTGC
GATTGGAATCAACAGAAGGAGATGATCCATGCAGCCTGGTTTTGAGATCTGACCAGGAGG
CTTTAGTGAAGCTAAACGATGTTGGTTTGCAGTTGGCTTTGTCATTCAGTGGAGAGGGTT
CTGTACTTGCCACTGGTGGCGAGGATGGACATTTGAGGGTCTTCAAATGGCCTGGCATGG
AAACCGTTATTGAAGAACCTGGTTCTAAATCATCTGTCAAAGATCTTAGTTTCAGTTCCG
ATGAGAAGTTTCTAGTTGTGAACAGGAGCAGTGGCCCATCTAGAGTGTGGGATTTAAAGT
CATCTGAAGCTGTGGCTAATTTGCCAAGAGAAGAAGGAGAAATATTTGGCTTCTGCCGAT
TTTCTACTAAGTCTAACAATAGCCAGATTCTCTTTGTTACAGCAATGCAAGGTGTTCACG
GGAAAATAATATCTTGGAATACCACCTCATGGACTAGAATTGGATCAAAGAAAGTAACTC
GTGATGCAATTTCAGCTTTTTCTGTCTCGCCTGATGGTACACTTTTAGCAATTGGAACTA
TTGAGGGAAGCATCAGTGTTCTTGGTTCAAGAGACATGCGAGTGGTTGTAACAGTTAAAA
AGGCACATCTTGGCATTGTTACTACATTAGCGTTTTCTCAAGATTCAAGGGCCTTGCTGT
CGACTTCCTTTGACTCAACCGCAAGGGTGACATCGACTGAATCACCCAAGAGCGATGGTA
TAAGCCTCTGGTCCATGATACTAGCTATTATTCTCGCAATTTTGGTATATTACTATATGC
AGCACAAAGAAGATCTCTTAGGCGTGTTGCCACAATGATAATTTTGTTCAGCCTCTACTA
ATATTTCACTGCTTACCTCTCTGATTATCTGATCTTGTACTGGAGATGAATTCTGTATCA
TGTCCGAGCTAGAGCAATTTTTTGTATTTAGGTGAAAGAAAAACGACTAAAAAAACGTCC
AGATCTTTTTTCTATCATGTCACACTGGTATAAAATGGCCATCCTCTCCGGGTTTGTAAA
ATTGGTCTGAATCTTGAACTTGTGCTATGTAGCCATGGTTTATGGTATCAAAGACATCGA
TTTACCGGCTCAAAAAAAAGCCATCCATTTGCTCCGTGATCTGTGTAGAGAAACAAACTA
TTTTATCCTTGCAAAAAAAAAGAAAAAAAAA

Homology of Contig U35_17997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39650.1	405	3e-163	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g13950.1	394	0.0
Arabidopsis v10	AT2G01470.1	393	6e-69	\| Symbols: STL2P, ATSEC12 \| SEC12P-like 2 protein \| chr2:212215-214435 REVERSE LENGTH=393