barSeed - Barley Seed Development Database

Probe CUST_29009_PI390587928

Source Contig U35_14005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29009_PI390587928	Hv_44K_v2	GTTGTTGGTTTTGGCAGACTGAAATCTATCTAGAACTGAAGTTGTGGTGGTACTAAAAAA	683	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.571	1.617	1.247	0.821	0.309	0.332
Raw	3588.453	5824.003	3869.063	4156.283	524.412	619.350

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11393.1	463	9e-22	186 - 240	100	55 / 55	minus	ABC01166 ABC31617
JLOC1	JLOC1_7541.1	416	5e-22	139 - 193	100	55 / 55	minus
Harvest21	ABC31617	588	2e-22	67 - 121	100	55 / 55	minus	ABC31617
Harvest35	U35_14005	754	3e-25	684 - 743	100	60 / 60	plus
Harvest35	U35_36541	588	2e-22	67 - 121	100	55 / 55	minus

Contig Sequence (754 bp)

>U35_14005 754 Hv_44K_v2
TCCGACTCCGAGCGAAACTCCTCTCTTTCAAAATTCAAACAGCACCACCGGCAGCAGCAT
CCATGGCGCCCAAAGCAGACAAGAAGGCGGCGGCCGAGAACAAGGTGGAGAAGGCGGCGG
CGGAGAAGGCCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGA
CGGCGGCCAAGGAGGGCGCCGGCGGCGAGGCGAAGGCGAGGGGCCGGAAGAAGGGCAGCA
AGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGC
ACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCGTCAACGACA
TCTTCGAGAAGCTCGCCGCCGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCG
TCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGC
ACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGATGCGT
CCGTCACCTCCCTGTAGTTGGTCTCTGTATCTGTATCTGTGCTCTTGACTCTGCCTATCT
CTCTGCAAGTAGTGGTGGTAGTAGTGGTACGTGTGCTGGGTGATTGCCAACGGTTTGTTG
GCTAATTGGTTGCAAGAACTGAAGTTGTTGGTTTTGGCAGACTGAAATCTATCTAGAACT
GAAGTTGTGGTGGTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49860.1	153	4e-53	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	4e-54
Arabidopsis v10	AT3G46030.1	145	2e-52	\| Symbols: HTB11 \| Histone superfamily protein \| chr3:16913614-16914051 REVERSE LENGTH=145