barSeed - Barley Seed Development Database

Probe CUST_29005_PI390587928

Source Contig U35_14007

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29005_PI390587928	Hv_44K_v2	GTGAACATACTGATTGTTTCAGTATCCTGAAGAAATAGAAATGGTGTCGCTTTGGTAAAA	588	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.112	1.716	1.179	0.895	0.495	0.471
Raw	12291.120	15465.150	8982.953	10687.193	2093.530	2172.340

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375339	659	3e-22	604 - 659	100	56 / 56	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_15744.1	626	3e-21	252 - 308	98	56 / 57	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01157 ABC01158 ABC01161 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC37479 ABC49951
JLOC1	JLOC1_10818.1	382	2e-21	252 - 308	98	56 / 57	plus
Harvest21	ABC01169	661	3e-25	589 - 648	100	60 / 60	plus	ABC01169
Harvest21	ABC31619	392	6e-22	14 - 74	97	59 / 61	minus	ABC31619
Harvest35	U35_14007	661	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_14007 661 Hv_44K_v2
CTCCCACCTTCCCAGCGAAACACCCACAGCACCACACCTCTCCCCGGCGAAGGAGCAGCA
GCAACCAGCGGCATCGATGGCCCCCAAGGCGGAGAAGAAGCCGGTGGCGGAGAAGGCCGA
GAAGAGCACGGCGGGGAAGAAGACCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGG
CGGCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTTGAGACGTACAAGATCTACAT
CTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCAT
CATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
GCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGT
CCTTCCCGGCGAGCTCGCCAAGCACGCCGTCAGCGAGGGAACCAAGGCCGTCACCAAGTT
CACCTCCGCTTAGATAGGCTGTTCATGCCGCTTCTTTGAATCTGTTGATTTCTGTTGGCT
GTTTGATGAATCCATTGTACGCCGTAGTTAGGTGTTGGGATGTAAGTTGTGAACATACTG
ATTGTTTCAGTATCCTGAAGAAATAGAAATGGTGTCGCTTTGGTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	7e-58	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00530.1	156	9e-59
Arabidopsis v10	AT5G22880.1	145	2e-55	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145