barSeed - Barley Seed Development Database

Probe CUST_29004_PI390587928

Source Contig U35_14008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29004_PI390587928	Hv_44K_v2	TCTTAGACAAGTCAAGCGAGCATAGCACATTGATATGCTGAGTTATTTGCACTTCTCCTA	1021	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.725	1.600	1.171	0.896	0.293	0.312
Raw	1553.307	2260.228	1442.968	1764.937	198.686	230.783

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38254.1	1249	8e-25	1023 - 1082	100	60 / 60	plus
Harvest21	ABC01170	1083	3e-25	1013 - 1072	100	60 / 60	plus	ABC01170
Harvest35	U35_50355	603	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_14008	1081	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_14008 1081 Hv_44K_v2
ACTAGGCCTATCATTCTTTTGTGGGAGCACTAGCAACCGCCCGGCCCAATCTGCTACCTC
CCGGTCGCCTATAAAATCATAAACCCTAACGTCTTCGTGCTCCCCCCTCCGCCGCCGCCA
CCCACGACCAACACCGGAGCCGGAGGAAGAGAGGAAGGGAGAAGCCAACAGGTAACGATG
GTGTCCGGCTCCGGTGTGTCCGCGCGTCGCGTGGTGGTGGATGCGCGCCACCACATGCTG
GGACGCCTTGCGTCGATCGTGGCCAAGGAGCTGCTCAACGGGCAGCGCGTGGTGGTGGTT
CGGTGCGAGGAGATGTGCATCTCCGGCGGGCTGGTCCGTCAGAAGATGAAGTACCTCCGC
TTCCTCCGCAAGCGGATGAACACCAAGCCGTCGCACGGTCCCATCCACTTCCGCGCCCCC
TCGAAAATTTTCTGGCGCACCGTGCGCGGCATGATCCCGCACAAGACGCCCCGCGGCGAG
GCTGCGCTCGCCAGGCTGAAGGCGTTCGAGGGCGTCCCGCCGCCTTATGATCGCACCAAG
CGTATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCGGGTCATAAGTACTGC
CTTCTCGGCGAGCTTTCCAAGGAGGTCGGGTGGAACTACCATGAAACTATCAAGGAACTG
GAGGAGAAGAGGAAGGAGAAGGCCAAGGTCTCTTACGACAGGAGGAAGCAACTGGCCAAG
CTGCGCGTCAAGGCTGAGAAGGCTGCAGAGGAGAAGCTGGGTTCTCAGTTGGACATCCTG
GCACCAATCAAGTACTAGCCTGCTGAGCAATCATGCATCGTCTATTTTGCTGGATAATGG
TCGTTATTGTTTACGTTAGTAGCCTGAGAGTGTCGATGAGGTTTCAAACCTATGAGTATC
TATACAATTCCAATCTTTGTAGCAAATGGATTGTTTGGTATTGTTGTTTCCCCCCCATGA
GGTTTCAAGATGTTGCTGTTTCCTCCCAAAAAAAAAAAAAAAAACTTCTTTTGCATCCAG
CTCTTAGACAAGTCAAGCGAGCATAGCACATTGATATGCTGAGTTATTTGCACTTCTCCT
A

Homology of Contig U35_14008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01870.1	207	7e-115	protein\|ribosomal protein L13, putative, expressed
Brachypodium v1_2	Bradi1g59280.1	207	4e-113
Arabidopsis v10	AT5G48760.1	206	2e-103	Ribosomal protein L13 family protein \| chr5:19771315-19772686 REVERSE LENGTH=206