- Probe CUST_29002_PI390587928
- Source Contig U35_29970
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29002_PI390587928 | Hv_44K_v2 | CGATCAGTCCTAGTTGTTGCTCTAATTTGTAGCAAGAAAAAGACCGAGAATAATAAGTAA | 299 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.847 | 1.721 | 1.289 | 0.734 | 0.199 | 0.197 |
| Raw | 57543.867 | 79194.700 | 54552.333 | 46373.933 | 4709.980 | 5017.730 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_30437.1 | 339 | 2e-24 | 152 - 211 | 100 | 60 / 60 | plus | ABC11592 ABC11593 ABC11594 ABC30098 |
| MLOC | MLOC_9297.1 | 316 | 6e-24 | 103 - 161 | 100 | 59 / 59 | minus | ABC11592 ABC11593 ABC11594 ABC30098 |
| MLOC | MLOC_42430.1 | 126 | 3e-21 | 50 - 109 | 97 | 58 / 60 | minus | ABC11593 ABC11594 |
| JLOC1 | JLOC1_20138.1 | 254 | 8e-25 | 155 - 214 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6081.1 | 405 | 3e-24 | 91 - 149 | 100 | 59 / 59 | minus | |
| Harvest21 | ABC11593 | 429 | 3e-25 | 300 - 359 | 100 | 60 / 60 | plus | ABC11593 |
| Harvest21 | ABC29589 | 386 | 1e-23 | 271 - 330 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC11594 | 492 | 1e-23 | 301 - 360 | 98 | 59 / 60 | plus | ABC11594 |
| Harvest21 | ABC11592 | 384 | 6e-22 | 285 - 344 | 97 | 58 / 60 | plus | ABC11592 |
| Harvest35 | U35_29970 | 394 | 3e-25 | 300 - 359 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34775 | 782 | 1e-24 | 320 - 378 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_19289 | 492 | 1e-23 | 301 - 360 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_19288 | 384 | 6e-22 | 285 - 344 | 97 | 58 / 60 | plus |
Contig Sequence (394 bp)
>U35_29970 394 Hv_44K_v2 AAATATAGAATAGAAGTAAGAATCAAGGAAATATTAAACAAGTTTGTTATGGCTCCAATC AACTCAAGGTTTTCGTGCTTGATGATGGCTCTTTTGCTGATGTCAACCACTTGTTTATCG AGTCAAGTATTAGAGAAAGAGAGGAGCATAGGTATGAAAGCCAACGCGTGCGCGGGCCGT GAACCTTACCAGTACAATTGTACGCCTGGTGGCTGTGTTACTGCCTGCAAAAAACTGGGC TGCGGAACTGGGGTTTGCCATTCAGATGGTAGTTGCTATTGCAGCTAGATGAGGCTGCTC GATCAGTCCTAGTTGTTGCTCTAATTTGTAGCAAGAAAAAGACCGAGAATAATAAGTAAT GTTGAGTTTTAACAAANAAAAAAAAAAAAAAAAA
Homology of Contig U35_29970 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |