barSeed - Barley Seed Development Database

Probe CUST_28_PI415269222

Source Contig TA49365_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28_PI415269222	Hv_44K_v2	TTGGGATATGGCCTAAGCCTCAATTATATTCATGCAGCTGTAACTTATTGATGTCCAAAG	1094	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368361	1172	3e-22	1117 - 1172	100	56 / 56	plus	ABC03880 ABC09378 ABC13308
JLOC1	JLOC1_14072.3	1116	8e-25	950 - 1009	100	60 / 60	plus
JLOC1	JLOC1_14072.2	989	8e-25	823 - 882	100	60 / 60	plus
JLOC1	JLOC1_14072.1	1376	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC13308	1199	3e-25	1093 - 1152	100	60 / 60	plus	ABC13308
Harvest35	U35_20910	1199	3e-25	1093 - 1152	100	60 / 60	plus

Contig Sequence (1154 bp)

>TA49365_4513 1154 Hv_44K_v2
CGGCACGAGGGTCTTCCTCACCTCTCCTCTCTCTCTCCATCCACCACCACGGTCATCCTC
GCACGAATCCCTTTCAAAAAATTTAAGACCACGCCCCAGATCACATCGAATTCACCACCA
CCGCCTCCCTCCCTCCCTCCTTCCGTGCTTCCATTTTCTTTCCCCCCCTCGTGCGCCTCG
CCACGAGCCGACAAGCCGCGGGCAGAGATCGATCGCGATCGCCCCCAGCCATGTCGACCT
CGCGCAGGCGGACCCTCCTCAAAGTCATCGTCCTCGGCGACAGCGGGGTCGGGAAGACGT
CGCTGATGAACCAATATGTTCACAACAAGTTTAGCCAGCAGTACAAAGCTACCATTGGTG
CGGATTTCGTCACCAAGGAGGTCCTCATTGAAGACAGGCTTGTCACATTGCAGATCTGGG
ACACTGCGGGGCAGGAGAGATTCCAGAGTCTTGGTGTCGCATTCTACAGAGGGGCAGATT
GTTGTGTGCTTGTTTATGATGTCAATGTTAACAAGTCATTTGATACGCTCAACACATGGC
ATGATGAGTTCCTCAACCAGGCTAGCCCATCAGATCCCAAAACATTCCCATTCATCCTAC
TTGGGAACAAGATTGACGTAGATGGTGGCAAAAGCAGAGTGGTTTCTGAGAAAAAAGCTA
TGGAGTGGTGTTCTTCAAAAGGCAATATTCCTTATTATGAAACTTCTGCAAAAGAAGACT
ACAACGTCGATGAAGCATTTTTGTCTGTTGCAAAGCTTGCTCTAGAGCATGAGCGTGACC
AGGACATCTACTTCCAAACAGTCGCAGATCCTGTCCCCGAGACTGAACAGAGAGGCGGGT
GTGCATGCTAGCGTTTAGCCGTCTTTGTCCTTCCAGATTTTGCCTGCTGTGTGTGGTATT
CTTTTTAAGTGATGCTCGGCATTCCTTTTGAGTTGACAATGTACACTAGGGTGCCTATGC
ATCCACTCCATTCACTTTTGTAACCCATGTAAGATAGTTAGCAACTATGGCTTCGGTTCA
CCGAATACTGATGAGCAGCCCGCCCTGTTTCTTGAGTCGGCAATAAGAGTGCAAAGTGGT
ACTACTGATACAATTTGGGATATGGCCTAAGCCTCAATTATATTCATGCAGCTGTAACTT
ATTGATGTCCAAAG

Homology of Contig TA49365_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51700.1	208	2e-138	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g48120.1	343	3e-148
Arabidopsis v10	AT1G22740.1	203	6e-115	\| Symbols: RAB7, ATRABG3B, RAB75, RABG3B \| RAB GTPase homolog G3B \| chr1:8049247-8050494 FORWARD LENGTH=203