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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28_PI390587928Hv_44K_v2TCAGAGGGAAGGCCGAGAAGAATGTGGAGTTGCTCTCGGAACACCTTGCGGATTGGGTCA758GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1131.7320.9370.6400.6560.384
Raw 37.72344.98522.10024.3087.3434.359



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35955116442e-24851 - 91010060 / 60plus ABC34627
Harvest21ABC178478773e-25759 - 81810060 / 60plus
Harvest21ABC320335725e-23289 - 34410056 / 56plus
Harvest35U35_78438773e-25759 - 81810060 / 60plus
Harvest35U35_367505725e-23289 - 34410056 / 56plus



Contig Sequence (877 bp)

>U35_7843 877 Hv_44K_v2
AGGCGGGCACCGGCTGCCGTCCACTCCAAGGGGCTCGGCTGTCAACAACCCACCCTTGGC
AGCCAGCCCGCAATTCCTTTTCCGCCTCCAGCTTCTCCGGCCACCCACAGCCAGGGGATC
GACAGGGAAGGGCAGGGCAGGGCATACAAATACCAGAACACCAGCTCCTCCTCCTACTCA
TTGCCAGAATCTGATTGATTGCTGAGACAAACCAGGCAGCATGGCTTCCTTCCACCGGCC
CCTTTCCGCCATGGCGGTGGCCGCCTTCGCCGCGGTCTCCTCCATAGAGCTACCCGACAG
GCTCTCCCACAACCACAGGGTCGCCGACGACGTCGTCTCGCTTCCCACCAGCAGGCCCGA
TGCCTCAACGGTGCCTCCAGCGCCGACGCTGTCCAGTCTGCAGTTCCTGCCACGGAACCT
CCAGGCCTTCGATGCCGCAGCCAAGGCGCCTGTCGCGTCCCTGCCAGTCATCCAGACGGT
CTACCAGTACGCCAAGTTCGCCAAGACCTCGCCGGAACAGGGGGCGCTGTTACCGGCCAT
CCCTTCCTCATCGTCGGAGGATGTTTTGTACCGCTGGCATCTGCCGGACCCGAGGGCGTG
CGGAGGCTCGCCCGACAGGTCCCAGACGGTGGTGGTTCTGCTTGGCTGGCTTGGCTCGAA
GCAGAAGCACCTGAAGAGATATGCAGATTGGTACACCTCCAGGGGGTTCCATGTTGTCAC
CTTCACCCTCCCCATGTCTGACATCGTCAGCTATAATGTCAGAGGGAAGGCCGAGAAGAA
TGTGGAGTTGCTCTCGGAACACCTTGCGGATTGGGTCAGGGAGGAGGATGGGAAGAAGAT
TGTTTTCCATACTTTCAGTAACACCGGCTGGCTTTGC



Homology of Contig U35_7843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g51390.24249e-101protein|expressed protein
Brachypodium v1_2Bradi1g29457.14202e-98
Arabidopsis v10None