barSeed - Barley Seed Development Database

Probe CUST_2899_PI390587928

Source Contig U35_16330

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2899_PI390587928	Hv_44K_v2	TGTTGCTTCTGTATAAGACAGTGTGCGTGTGAGATCGCAATAATAAGAGCTGCTTTCGAG	386	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.186	0.611	0.373	1.312	1.587	2.866
Raw	3.851	29.802	14.937	74.539	35.273	70.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48313.1	353	2e-24	172 - 231	100	60 / 60	minus	ABC43921
MLOC	AK354817	695	7e-23	397 - 457	98	60 / 61	plus	ABC43921
JLOC1	JLOC1_31043.1	275	8e-25	97 - 156	100	60 / 60	minus
Harvest21	ABC43921	468	3e-25	389 - 448	100	60 / 60	plus	ABC43921
Harvest21	ABC04740	545	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_16330	545	3e-25	387 - 446	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_16330 545 Hv_44K_v2
CAGGAAGACCACGTCGAATTAGCCAGGAACGAGCGTGTGAAGTGCAAGCAGGTAGGAAGG
ATGTCGGGGGCACAGGGGGCGCACCCGGTCGGGCAGACGACGGCGACGACGTACGAGTCG
GTGGGCGGCGGGGAGAACCGCACGCGCACGGACCTGCGGTCGCGGGAGGACCAGGGCAAC
ATCCAGATCGAGAAGGTGCAAGACAAGGTGGAGGACGCCGCGTCGCGCAAGGTTGACGAC
AGCGCCTTCGCTGCCAGGAAGGAGCCGGGCCAGGCCGGCGACGCCGGGGCCACCGGCACC
GGCGCGTGATCCGGGTTCTGTAGTGCCCCGCCCCGCGCGCGCGTCGCACGACCATGAGGT
AGCTCGGTTTGCGCGCGGTGGCGTCGTGTTGCTTCTGTATAAGACAGTGTGCGTGTGAGA
TCGCAATAATAAGAGCTGCTTTCGAGTTTAAAAAAAAAAAAAAAAAATTTCCTGTTCATG
CAAACACTCTGCTACGACCTTTTCAGATGAGATACTCCCTCCCTTCCTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_16330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None