- Probe CUST_28998_PI390587928
- Source Contig U35_29974
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28998_PI390587928 | Hv_44K_v2 | TGGGATTGTTCCATCGTACTTTTCGCGGGCCACAAATGTGGCAGAGATATTACTAGGTTA | 308 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.401 | 6.529 | 3.272 | 0.326 | 0.028 | 0.025 |
| Raw | 1266.077 | 2766.883 | 1055.775 | 175.359 | 2.802 | 3.298 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76582.1 | 658 | 2e-24 | 517 - 576 | 100 | 60 / 60 | plus | None |
| Harvest21 | ABC29580 | 369 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29974 | 369 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus |
Contig Sequence (369 bp)
>U35_29974 369 Hv_44K_v2 CGGCGATCCCGGGCGGCGGCGCGGGGACGTTGGCAGCGGGAGCGCCAGCGTGCCTCCAGT GCCGGTGCTGCTCCAAGTCGAACCCGGGCAGCTGCCAGATCACGAGCTGCTGCTCCACCT TCAACTGCGATCCCAGCGGCAAGTGCAACCTCGTGCAACAAAAGTGCGGCTGCAACGGCT GCTAATCGGCCAGTCATCACCGTGCTAGCTGCCTCCATGTCAAATTTCTCTGTGGAGCCG CCAAGTGTTTTCTTTGTTCCATTTTGTTTTTCTTAGGAAAATTCCCATATATTTTGTGTA CTGCCAAATGGGATTGTTCCATCGTACTTTTCGCGGGCCACAAATGTGGCAGAGATATTA CTAGGTTAC
Homology of Contig U35_29974 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |