barSeed - Barley Seed Development Database

Probe CUST_28997_PI390587928

Source Contig U35_29975

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28997_PI390587928	Hv_44K_v2	CTGCGGTGCGGCGTCGGACGCGGCGTACTGCGACCGGGCGCTGCCGGCCGAGCGGCGGGC	114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62475.1	3826	7e-23	2416 - 2475	98	59 / 60	minus	ABC05703 ABC46678
Harvest21	ABC29582	314	3e-25	115 - 174	100	60 / 60	plus
Harvest35	U35_29975	314	3e-25	115 - 174	100	60 / 60	plus

Contig Sequence (314 bp)

>U35_29975 314 Hv_44K_v2
GCCGGCTACTCGGCAAGTGACCACCCACTAACCATGGGACGCCGGCGCACATCGTCCCGG
CGGCGGCGCTGTGTGGCTTCTCACTTCACGCGGCATGGCGCGACCCGCCTTCTCCTGCGG
TGCGGCGTCGGACGCGGCGTACTGCGACCGGGCGCTGCCGGCCGAGCGGCGGGCGGCAGA
CCTGGTGTCGAAGCTGTCGCTGGAGGAGAAGATCTCGCAGCTGGGCGACGAGTCGCCGGC
CGTGGCCCGGCTGGGCGTGCCGGCGTACAAGTGGTGGTCGGAGGCGCTGCACGGCGTGGC
GTGGAGCAAGGGCG

Homology of Contig U35_29975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None