- Probe CUST_28994_PI390587928
- Source Contig U35_29978
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28994_PI390587928 | Hv_44K_v2 | ATCAAGAGCTTCTCGTGGCATCAGCGAGATAGATCCCACCGGCTTCCCGGGCTACGGGAG | 256 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.298 | 1.381 | 2.682 | 1.576 | 0.624 | 0.439 |
| Raw | 25.692 | 43.807 | 71.318 | 64.402 | 8.749 | 7.108 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56058.1 | 1573 | 2e-24 | 1242 - 1301 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_36227.1 | 1533 | 8e-25 | 273 - 332 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29586 | 328 | 3e-25 | 257 - 316 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29978 | 328 | 3e-25 | 257 - 316 | 100 | 60 / 60 | plus |
Contig Sequence (328 bp)
>U35_29978 328 Hv_44K_v2 GGGAGTCAGAGGCTACTCCCCTTGTTCTCCTCGCTTTGCTTGCCCCATCTCTACCGCGGG TGTTCCTCCTCCACTGGTCGGATCCTACCTCGGAGGTCGAGTTGATGGCTGAAGGGAGTG CCTGTTTCAACTGGGGCATGGCGACCTCGATGGTCGGGAACCACTACCCGGGCTCCGGCC ATGGCGGTGTTGCACAACACTTTGTCCATGATGATGATGATGCTCCGGCCGGGGTGGTCG TCGTCCCGGGCGTCGGATCAAGAGCTTCTCGTGGCATCAGCGAGATAGATCCCACCGGCT TCCCGGGCTACGGGAGCACCGACGCCCA
Homology of Contig U35_29978 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |