barSeed - Barley Seed Development Database

Probe CUST_28992_PI390587928

Source Contig U35_14010

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28992_PI390587928	Hv_44K_v2	GTAAGAGTTCTGCTGCGTGTGCCTCTGAAGAAATAGTAATGTTGCTGTCCTCTGAAAAAA	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374993	602	3e-21	549 - 602	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
Harvest21	ABC01177	610	3e-25	11 - 70	100	60 / 60	minus	ABC01177
Harvest35	U35_14010	610	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_14010 610 Hv_44K_v2
GCGCAGCCCCACAGCCCACACCCTCACCACACCGCCGAACCACCCATGGCACCCAAGGCT
GAGAAGAAGCCGGCGCCCGAGAAGACCCCGGCGGCAAAGAAGCCCGCGGCGGAGAAGAGG
CCGGCGGCCGGCAAGGCGGCGTCCAAGGAGGGCGGCGAGAAGAAGGGCAAGAAGAAGTCC
AAGAAGAGCGTTGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCC
GACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTC
GAGAAGCTCGCCGGCGAGTCGGCCAAGCTCGCGCGGTACAACAAGAAGCCCACCATCACC
TCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCC
GTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCGTCGTACTCGGGT
CATGAACTGATTTGATGGCGGCGTTCTGTACGTAGTTAGCAGTACGACGTTACAATCTCT
GTAAGAGTTCTGCTGCGTGTGCCTCTGAAGAAATAGTAATGTTGCTGTCCTCTGAAAAAA
AAAAAAAAAA

Homology of Contig U35_14010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	8e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	6e-56
Arabidopsis v10	AT5G22880.1	145	4e-54	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145